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Report for CCDS90696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90696.1 Public Mus musculus X Srpx 23 108 98 CCDS HistoryNCBI Gene:51795Re-query CCDS DB by CCDS ID:90696.1Re-query CCDS DB by GeneID:51795See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115543.2 ENSMUSP00000111205.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115543.2Link to Ensembl Protein Viewer:ENSMUSP00000111205.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115543Re-query CCDS DB by Protein ID:ENSMUSP00000111205
Original member Current member NCBI NM_001365087.1 NP_001352016.1 Accepted alive Link to Nucleotide Sequence:NM_001365087.1Link to Protein Sequence:NP_001352016.1Re-query CCDS DB by Nucleotide ID:NM_001365087Re-query CCDS DB by Protein ID:NP_001352016Link to BLAST:NP_001352016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352016.1 380 Q9R0M3-2 380 100% 0 0

Chromosomal Locations for CCDS 90696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 10038917 10039100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10047675 10047796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10049616 10049749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10054852 10055031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10055679 10055800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10058953 10059079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10067425 10067601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10117444 10117540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGGGAGCCCGGGACTTCGGCCCGAGCTGCTGCTGCCTCAAGTACTGCCGCTGTTGCTGGCGCTGCTGC
ACGTCCTGCCGAGCCAGGGCTTCCCAGAGAAGCGATGTCCTACCCTTACCATGCCGGCAAATGGAGGGTT
TAAGTGTGTCGATGGTGCCTACTTTAACTCTCGGTGTGAGTACTATTGTTCACCAGGATATACATTGAAA
GGGGAGCGAACAGTCACATGTATGGACAACAAGGCCTGGAGTGGCCGACCAGCCTCCTGTGTAGATCTGG
AACCTCCTAGAATCAAGTGCCCAAGTGTGAAAGAACGTATAGCTGAGCCCAATAAGCTGACAGTCCGGGT
GTCCTGGGAAAGCCCAGAGGGAAGAGATACAGCGGATGGGATTCTTACTGATGTTATTCTGAAAGGCCTT
CCTCCGGGCTCAAATTTTCCAGAAGGAGACCACAAGATTGAGTACACAGTCTATGACAGAGCCGAGAACA
AGGGAACTTGCAAGTTTCGAGTTAAAGTAAGAGTCAGACGTTGTGGCAAGCTCAATGCCCCAGAAAATGG
TTACATGAAGTGTTCCAGCGATGGTGACAATTATGGAGCCACCTGTGAATTCTCCTGTATTGGCGGCTAT
GAGCTTCAGGGTAGTCCTGCCCGAGTATGCCAATCCAATCTGGCTTGGTCCGGCACAGAGCCCAGCTGTG
CAGCGATGAATGTCAATGTTGGTGTCAGAACAGCAGCTGCACTTCTGGATCAGTTTTATGAGAAAAGGCG
ACTCCTCATTGTATCTACACCCACAGCTCGAAACCTCCTCTACAGATTGCAGCTGGGAATGCTACAGCAA
GCACAGTGTGGCCTCGATCTCCGACATGTCACCGTGGTGGAGCTGGTAGGGGTCTTCCCAACTCTCATCG
GCAGGATCAGAGCAAAGATTATGCCTCCAGCTCTAGCTCTACAGCTCAGGCTGTTGCTTCGAATTCCTCT
CTACTCCTTCAGCATGGTGGTAGTGGATAAGCATGGCATGGATAAAGAACGTTATGTCTCCTTAGTGACA
CCCATGGCTCTCTTCAACCTCATTGACACTTTCCCCCTGAGAAAAGAAGAGATGATCCTGCAGGCTGAGA
TGGGCCAGACTTGCAACGTCTGA

Translation (380 aa):
MGSPGLRPELLLPQVLPLLLALLHVLPSQGFPEKRCPTLTMPANGGFKCVDGAYFNSRCEYYCSPGYTLK
GERTVTCMDNKAWSGRPASCVDLEPPRIKCPSVKERIAEPNKLTVRVSWESPEGRDTADGILTDVILKGL
PPGSNFPEGDHKIEYTVYDRAENKGTCKFRVKVRVRRCGKLNAPENGYMKCSSDGDNYGATCEFSCIGGY
ELQGSPARVCQSNLAWSGTEPSCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTARNLLYRLQLGMLQQ
AQCGLDLRHVTVVELVGVFPTLIGRIRAKIMPPALALQLRLLLRIPLYSFSMVVVDKHGMDKERYVSLVT
PMALFNLIDTFPLRKEEMILQAEMGQTCNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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