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Report for CCDS90198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90198.1 Public Mus musculus 7 Dpf1 23 108 98 CCDS HistoryNCBI Gene:29861Re-query CCDS DB by CCDS ID:90198.1Re-query CCDS DB by GeneID:29861See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065181.11 ENSMUSP00000070539.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065181.11Link to Ensembl Protein Viewer:ENSMUSP00000070539.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065181Re-query CCDS DB by Protein ID:ENSMUSP00000070539
Original member NCBI NM_001368371.1 NP_001355300.1 Updated not alive Link to Nucleotide Sequence:NM_001368371.1Link to Protein Sequence:NP_001355300.1Re-query CCDS DB by Nucleotide ID:NM_001368371Re-query CCDS DB by Protein ID:NP_001355300
Current member NCBI NM_001368371.2 NP_001355300.1 Accepted alive Link to Nucleotide Sequence:NM_001368371.2Link to Protein Sequence:NP_001355300.1Re-query CCDS DB by Nucleotide ID:NM_001368371Re-query CCDS DB by Protein ID:NP_001355300Link to BLAST:NP_001355300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355300.1 387 Q9QX66-1 387 100% 0 0

Chromosomal Locations for CCDS 90198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29308070 29308098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29309411 29309571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29309645 29309752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29311265 29311392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29311607 29311696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29312848 29312926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29313082 29313213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29314139 29314189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29314283 29314402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29315624 29315736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29316244 29316325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29316481 29316551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCCACGGTCATCCCCAGCCCCCTGAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGTC
GCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGAGT
GGCCCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCGGGACAGATC
TACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGC
CCTGCGAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCT
CGAGGCTCTGCTGTGTGCTGAGACTGGAGAGAAGAAAGTGGAGCTGAAGGAGGAGGAGACCATCATGGAC
TGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCA
GGAGGAAGAACAGGGCAAGAGGAAAGGCATATGGCATTGGAGGTCTCCGCAAACGCCAGGACACCGCATC
CCTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGATATAAGAACCGGCCAGGACTC
AGCTACCATTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAACGCCACGCCCTGC
CTTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAA
ACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGC
TCCAAGAAGACTGGGTGTCCCGAGGACCTCATCTCCTGTGCGGACTGTGGGCGATCAGGACATCCCTCGT
GTTTACAGTTCACGGTGAACATGACCGCGGCTGTGCGGACCTACCGCTGGCAGTGCATTGAATGCAAGTC
CTGCAGCCTGTGTGGCACCTCGGAGAATGACGACCAGCTGCTGTTCTGTGATGACTGCGATCGAGGTTAC
CACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGCTGCCACCTCTGTCTCC
GGCACTTGAAGGAAAAGGCCTCTGCTTACATCACCCTGACCTAG

Translation (387 aa):
MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQI
YTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMD
CQKQQLLEFPHDLEVEDLEEDIPRRKNRARGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGL
SYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGG
SKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGY
HMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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