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Report for CCDS89709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89709.1 Public Mus musculus 3 Fubp1 23 108 98 CCDS HistoryNCBI Gene:51886Re-query CCDS DB by CCDS ID:89709.1Re-query CCDS DB by GeneID:51886See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196695.4 ENSMUSP00000143729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196695.4Link to Ensembl Protein Viewer:ENSMUSP00000143729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196695Re-query CCDS DB by Protein ID:ENSMUSP00000143729
Original member NCBI NM_001355372.1 NP_001342301.1 Updated not alive Link to Nucleotide Sequence:NM_001355372.1Link to Protein Sequence:NP_001342301.1Re-query CCDS DB by Nucleotide ID:NM_001355372Re-query CCDS DB by Protein ID:NP_001342301
Current member NCBI NM_001355372.2 NP_001342301.1 Accepted alive Link to Nucleotide Sequence:NM_001355372.2Link to Protein Sequence:NP_001342301.1Re-query CCDS DB by Nucleotide ID:NM_001355372Re-query CCDS DB by Protein ID:NP_001342301Link to BLAST:NP_001342301.1

Chromosomal Locations for CCDS 89709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152210593 152210700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152213977 152214067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152215592 152215630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217409 152217448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217832 152217884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152217976 152218047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152218213 152218270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152219684 152219846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152219933 152220031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220136 152220237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220465 152220567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152220686 152220786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152221267 152221408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152222084 152222244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152222829 152222980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152223286 152223365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152226080 152226217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152228171 152228245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152231877 152232022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152232395 152232403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGCCGACTACTCCACAGTGCCTCCGCCGTCGTCTGGCTCGGCTGGCGGCGGCGGCGGCGGAGTCGTTA
ACGACGCTTTCAAAGATGCCCTGCAGAGAGCGCGGCAGATTGCAGCAAAAATTGGGGGTGATGCTGGTAC
ATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAAAGACCCTTAGAAGATGGAGATCAGCCAGAT
GCTAAGAAAGTACCTCCCCAAAATGACTCTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAGCA
GATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTATAATTGGCAGAGGAGGTGA
ACAGATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTGATAGTGGTGGCCTACCA
GAAAGGTCTTGTATGCTAACTGGAACACCTGAATCTGTCCAATCAGCAAAAAGATTATTGGACCAGATTG
TTGAAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGAAATGCAGTTCAGGAAATCAT
GATTCCAGCCAGCAAAGCAGGACTAGTTATTGGAAAGGGGGGCGAGACTATTAAACAACTTCAGGAACGG
GCTGGTGTTAAAATGGTAATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTA
CGGGTGACCCATACAAAGTTCAGCAAGCCAAGGAAATGGTATTAGAGTTAATTCGTGATCAAGGTGGTTT
CAGAGAAGTGCGGAATGAGTATGGCTCAAGAATAGGAGGCAATGAAGGGATAGATGTCCCAATTCCAAGA
TTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTC
GAATTCAGTTTAAGCCAGATGATGGAACAACACCTGATAGGATAGCACAGATAACAGGACCTCCAGACAG
GTGTCAGCACGCTGCAGAAATAATCACAGACCTTCTACGAAGTGTTCAGGCTGGCAATCCTGGTGGACCG
GGACCTGGTGGTCGAGGACGAGGTAGAGGTCAAGGAAACTGGAATATGGGGCCCCCGGGTGGACTCCAGG
AGTTTAATTTCATTGTGCCAACTGGGAAAACTGGACTGATCATTGGAAAAGGAGGTGAAACCATAAAAAG
CATAAGCCAACAGTCTGGTGCAAGAATAGAACTGCAGAGAAGCCCTCCACCTAATGCAGATCCCAATATG
AAGTTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTG
GGGGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGGGTTCCAGGTCCTCATGGGCC
TCCTGGACCTCCAGGGCCGGGAACTCCAATGGGACCATACAACCCTGCACCTTACAATCCAGGACCACCT
GGCCCAGCTCCTCACGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGC
AGCAACAGGCTCCTCCTGACCCAGCCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTA
TGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAA
ACGAACGGACAAGGTAACTACGGAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGG
CTTGGGAAGAATACTACAAGAAAATGGGTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCA
GCCGGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAGCAAGCAGCGTATTATGCCCAGACAAGTCCC
CAGGGGATGCCGCAGCATCCTCCAGCACCTCAGGGCCAATAA

Translation (643 aa):
MADYSTVPPPSSGSAGGGGGGVVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPD
AKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP
ERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQER
AGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPR
FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGP
GPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNM
KLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPP
GPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYYAHYYQQQAQPPPAAPAGAPATTQ
TNGQGNYGDQQAPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAYYAQTSP
QGMPQHPPAPQGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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