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Report for CCDS89240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89240.1 Public Mus musculus 18 Fam170a 23 108 98 CCDS HistoryNCBI Gene:225497Re-query CCDS DB by CCDS ID:89240.1Re-query CCDS DB by GeneID:225497See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238078.1 ENSMUSP00000158194.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238078.1Link to Ensembl Protein Viewer:ENSMUSP00000158194.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238078Re-query CCDS DB by Protein ID:ENSMUSP00000158194
Original member Current member NCBI NM_001357517.1 NP_001344446.1 Accepted alive Link to Nucleotide Sequence:NM_001357517.1Link to Protein Sequence:NP_001344446.1Re-query CCDS DB by Nucleotide ID:NM_001357517Re-query CCDS DB by Protein ID:NP_001344446Link to BLAST:NP_001344446.1

Chromosomal Locations for CCDS 89240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50278624 50278678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50280525 50280671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50281491 50282252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50282525 50282583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50282897 50282986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGAAACGGCGACAAAAGAGGAAACATCTGGAAATTGAAGAGTCAAAGGAAGCTGGAATTTCAAAGTCAC
AAGAGGATATCTCTCATCCTGAATCCACTGGAGTGCCCAAAGCCCAGAGCCCAGGGGTAGGGGAGGTCTC
CTCTGCCTCCGAATACTTCTCCTGTGTTTCTTCTCCACAAAAGCTCATCCATCGTAGTAAGGGAACCTGG
AAATTGCTACAGGACAGTTCCAAGCCTAGATCACCACTAGATCAGGTTCCGGAAGGAGAGGCGACTACTG
CCCCCTCACAACAGGCCTCTTCATCCTGTCCATCGTATAAGACTTGTGTGTCCTCTCTGTGTATGAACAA
AGAGGAGAGGGGGATGAAAATATACTACATGCAGGTGCAAATGAAAAAAGGTGTGGCCATCTCCTGGGAC
ACAAAGGAAACCTCAGAGTCCCTAGAAAAGCAGCCAAGGATGGAAGAAGCCACCCTTCCTGAGGGTGTGT
GGGTAGGTACTCCACCCTCTGATGTGTCCACCAGAAACCTCCTGTCGGACAGTGAACCCATTGGGGAAGA
GAAAGAACATGAGGAAAAACCAGAGTCAGACAGCCCACCAGGGTCTCCCGCGGTTGAAGAGAGACCAAGG
GCAAAGACACCTGACTGGCTCGTGACCATGGAGAATGGCTTTAGGTGTATGGCCTGCTGCAGGGTCTTCG
CCACCATGGAAAGCCTCCAAGAGCATGTGCAGTATGGGATCAGGGAAGGCTTCAGCTGCCACGTCTTCCA
TCTCACCATGGCTCAGCTGATTGGCAGCATGGAATCAGAGAGCACCCAGGAGGAGGAAGAGGACCACACC
GAGGAAACCGAGAAACCCAAGGAAGAGAAGGCTGAGGAGCAGCAGCCCACAGAGGAAGATGTCGGCATGA
AGAAACCCTGGAGCCAATGTCCAGGCTGTGTGTTTGATTCTCCAAAGGACAGAACAACTGAGATTCCTGG
GTCAGAAGAACATGCAAGATGGGGTGGCCCTTTCTTGGGAGAGGAAGAAGAAAGGACCATTGCGACAACA
GCGGCAGCTGACAATGCCAGTAGTACAAAGGAAGACGAGAACAACACTCCGTCGGACACATAA

Translation (370 aa):
MKRRQKRKHLEIEESKEAGISKSQEDISHPESTGVPKAQSPGVGEVSSASEYFSCVSSPQKLIHRSKGTW
KLLQDSSKPRSPLDQVPEGEATTAPSQQASSSCPSYKTCVSSLCMNKEERGMKIYYMQVQMKKGVAISWD
TKETSESLEKQPRMEEATLPEGVWVGTPPSDVSTRNLLSDSEPIGEEKEHEEKPESDSPPGSPAVEERPR
AKTPDWLVTMENGFRCMACCRVFATMESLQEHVQYGIREGFSCHVFHLTMAQLIGSMESESTQEEEEDHT
EETEKPKEEKAEEQQPTEEDVGMKKPWSQCPGCVFDSPKDRTTEIPGSEEHARWGGPFLGEEEERTIATT
AAADNASSTKEDENNTPSDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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