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Report for CCDS89221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89221.1 Public Mus musculus 18 Cystm1 23 108 98 CCDS HistoryNCBI Gene:66060Re-query CCDS DB by CCDS ID:89221.1Re-query CCDS DB by GeneID:66060See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050584.9 ENSMUSP00000051708.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050584.9Link to Ensembl Protein Viewer:ENSMUSP00000051708.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000050584Re-query CCDS DB by Protein ID:ENSMUSP00000051708
Original member Current member EBI ENSMUST00000236374.1 ENSMUSP00000157423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236374.1Link to Ensembl Protein Viewer:ENSMUSP00000157423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236374Re-query CCDS DB by Protein ID:ENSMUSP00000157423
Original member Current member EBI ENSMUST00000235403.1 ENSMUSP00000157550.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235403.1Link to Ensembl Protein Viewer:ENSMUSP00000157550.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235403Re-query CCDS DB by Protein ID:ENSMUSP00000157550
Original member Current member EBI ENSMUST00000237375.1 ENSMUSP00000158042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237375.1Link to Ensembl Protein Viewer:ENSMUSP00000158042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237375Re-query CCDS DB by Protein ID:ENSMUSP00000158042
Original member Current member EBI ENSMUST00000235864.1 ENSMUSP00000158380.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235864.1Link to Ensembl Protein Viewer:ENSMUSP00000158380.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235864Re-query CCDS DB by Protein ID:ENSMUSP00000158380
Original member Current member NCBI NM_001368637.1 NP_001355566.1 Accepted alive Link to Nucleotide Sequence:NM_001368637.1Link to Protein Sequence:NP_001355566.1Re-query CCDS DB by Nucleotide ID:NM_001368637Re-query CCDS DB by Protein ID:NP_001355566Link to BLAST:NP_001355566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355566.1 104 Q8K353 104 100% 0 0

Chromosomal Locations for CCDS 89221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36366534 36366741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36402497 36402603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGAACCCAGAGAACCCTCCACCGTATCCGGGCCCCGGGCCAACAGCCCCATACCCACCTTATCCACAAC
AGCCAATGGGGCCAATGGGGCCTATGGGAGCCCCACCTCCTCAGGGGTACCCCTACCCACCACCTCAGGG
GTACCCCTATCAAGGATACCCACAGTACGGCTGGCAGGGTGGACCTCAGGAGCCTCCTAAGACCACAGTG
TATGTGGTGGAAGACCAAAGAAGAGACGACCTGGGCCCATCCACCTGCCTCACAGCCTGCTGGACTGCTC
TGTGTTGCTGCTGCCTCTGGGACATGCTCACCTGA

Translation (104 aa):
MNPENPPPYPGPGPTAPYPPYPQQPMGPMGPMGAPPPQGYPYPPPQGYPYQGYPQYGWQGGPQEPPKTTV
YVVEDQRRDDLGPSTCLTACWTALCCCCLWDMLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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