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Report for CCDS89179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89179.1 Public Mus musculus 18 Crem 23 108 98 CCDS HistoryNCBI Gene:12916Re-query CCDS DB by CCDS ID:89179.1Re-query CCDS DB by GeneID:12916See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156234.7 ENSMUSP00000121388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156234.7Link to Ensembl Protein Viewer:ENSMUSP00000121388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156234Re-query CCDS DB by Protein ID:ENSMUSP00000121388
Current member NCBI NM_001374833.1 NP_001361762.1 Accepted alive Link to Nucleotide Sequence:NM_001374833.1Link to Protein Sequence:NP_001361762.1Re-query CCDS DB by Nucleotide ID:NM_001374833Re-query CCDS DB by Protein ID:NP_001361762Link to BLAST:NP_001361762.1

Chromosomal Locations for CCDS 89179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3267985 3268129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3273422 3273578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3276694 3276729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3287904 3288092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3295040 3295182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3295322 3295416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3299162 3299308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3325361 3325474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGACCATGGAAACAGTTGAATCACAGCAGGATCGAAGTGTAACACGTTCTGTGGCAGAGCATAGCTCTG
CTCATATGCAGACTGGTCAAATTTCTGTTCCTACTCTAGCTCAGGTTTCTGTAGCTGGATCAGGCACTGG
AAGAGGCTCCCCAGCTGTGACTCTAGTACAGTTACCTTCAGGCCAAACTGTACAGGTCCAGGGAGTTATT
CAGACACCACATCCATCGGTTATTCAATCACCACAAATACAAACTGTTCAGGTAGCAACAATTGCAGAGA
CAGATGATTCTGCAGACTCAGAAGTAATTGATTCGCATAAACGTAGAGAAATTCTTTCACGAAGACCCTC
ATATAGAAAAATACTGAATGAACTTTCCTCTGATGTGCCTGGTATTCCCAAGATTGAAGAAGAAAAATCA
GAGGAAGAAGGGACACCACCTAACATTGCTACCATGGCAGTACCAACTAGCATATATCAGACTAGCACGG
GGCAATACATTGCTATAGCTCAAGGTGGAACAATCCAGATTTCTAACCCAGGATCTGATGGTGTTCAGGG
ACTCCAGGCATTAACAATGACAAATTCAGGAGCTCCTCCGCCAGGTGCTACAATTGTACAGTATGCAGCA
CAATCAGCCGATGGTACACAGCAGTTCTTTGTCCCAGGCAGCCAGGTTGTTGTTCAAGATGAGGAGACTG
ACCTTGCCCCAAGTCACATGGCTGCTGCCACAGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTAC
TGCTTTGCCACAAGGTGTGGTGATGGCTGCCTCACCAGGAAGCCTGCACAGTCCCCAGCAACTAGCAGAA
GAAGCAACTCGCAAGCGGGAGCTGAGGCTGATGAAAAACAGGGAAGCTGCCCGGGAGTGTCGCAGGAAGA
AGAAAGAATATGTCAAATGTCTTGAAAATCGTGTGGCTGTGCTTGAAAATCAAAACAAGACCCTCATTGA
GGAACTCAAGGCCCTCAAAGACCTTTATTGCCATAAAGCAGAGTAA

Translation (341 aa):
MTMETVESQQDRSVTRSVAEHSSAHMQTGQISVPTLAQVSVAGSGTGRGSPAVTLVQLPSGQTVQVQGVI
QTPHPSVIQSPQIQTVQVATIAETDDSADSEVIDSHKRREILSRRPSYRKILNELSSDVPGIPKIEEEKS
EEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNSGAPPPGATIVQYAA
QSADGTQQFFVPGSQVVVQDEETDLAPSHMAAATGDMPTYQIRAPTTALPQGVVMAASPGSLHSPQQLAE
EATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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