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Report for CCDS88898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88898.1 Public Mus musculus 16 Alg3 23 108 98 CCDS HistoryNCBI Gene:208624Re-query CCDS DB by CCDS ID:88898.1Re-query CCDS DB by GeneID:208624See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231531.1 ENSMUSP00000156241.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231531.1Link to Ensembl Protein Viewer:ENSMUSP00000156241.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231531Re-query CCDS DB by Protein ID:ENSMUSP00000156241
Original member Current member NCBI NM_001357403.1 NP_001344332.1 Accepted alive Link to Nucleotide Sequence:NM_001357403.1Link to Protein Sequence:NP_001344332.1Re-query CCDS DB by Nucleotide ID:NM_001357403Re-query CCDS DB by Protein ID:NP_001344332Link to BLAST:NP_001344332.1

Chromosomal Locations for CCDS 88898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20605555 20605717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20605862 20606006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20606526 20606602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20606760 20606965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20607764 20607884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20608486 20608646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20608742 20608819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCCCAGAACATCTTTGCTGTACTCTACCTTGTCACCTTGGTGCTTGTTTTCTTGATATACCACCAGA
CCTCCAAGGTACCTCCCTTCGTCTTTTTCTTCATGTGTTGTGCCTCTTACCGTGTCCATTCCATCTTTGT
ACTGCGGCTCTTCAATGACCCAGTAGCTATGGCCTTGCTCTTCCTGAGCATCAACCTTTTCCTGGCACAG
TGCTGGAGCTGGGGCTGCTGCTGTTTCAGCCTGGCTGTCTCGGTGAAGATGAATGTGCTGCTCTTCGCCC
CGGGATTGCTATTCCTTCTTCTTACTCAGTTTGGCTTCCGTGGTGCCCTCCCCAAGCTGGCCATCTGTGC
TGCTCTTCAGGTGGTGCTGGGATTGCCCTTCCTGCTGGAGAACCCCATTGGCTACCTATCCCGCTCCTTT
GACCTTGGTCGTCAGTTTCTTTTCCAATGGACAGTAAACTGGCGCTTCCTGCCTGAAACCATCTTCCTGC
ATCGTGCCTTCCATCTAGCCCTGTTGGCTGCCCACCTTAGCCTCCTCTTGCTGTTTGCCCTCTGTAGGTG
GCACAGAACAGGGGAAAGTATTCTGGCACTGCTGAAGGATCCTTCCAAAAGGAAAGTTCCACCCCAAGCC
CTCACACCTAACCAGATTGTTTCCATCCTCTTCACCTCCAACTTCATTGGCATCTGCTTTAGCCGCTCGC
TCCACTACCAGTTTTATGTCTGGTATTTCCACACACTGCCCTACCTCCTGTGGGCCATGCCTGCACGCTG
GCTCACACACCTGCTCAGGTTGCTGGTGCTGGGACTCATTGAGCTCTCCTGGAATACGTACCCATCCACG
TCCTTCAGCTCTGCCGCCCTCCACCTGTGCCACGCTGTCGTCCTGCTGCAGCTCTGGCTGTCCCCCGAGT
CCTTCCCTAAGAGCATTCAGCCAAGCAGGAAAACTCACTGA

Translation (316 aa):
MAQNIFAVLYLVTLVLVFLIYHQTSKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMALLFLSINLFLAQ
CWSWGCCCFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLAICAALQVVLGLPFLLENPIGYLSRSF
DLGRQFLFQWTVNWRFLPETIFLHRAFHLALLAAHLSLLLLFALCRWHRTGESILALLKDPSKRKVPPQA
LTPNQIVSILFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPST
SFSSAALHLCHAVVLLQLWLSPESFPKSIQPSRKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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