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Report for CCDS88861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88861.1 Public Mus musculus 15 Pde1b 23 108 98 CCDS HistoryNCBI Gene:18574Re-query CCDS DB by CCDS ID:88861.1Re-query CCDS DB by GeneID:18574See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227955.1 ENSMUSP00000153722.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227955.1Link to Ensembl Protein Viewer:ENSMUSP00000153722.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227955Re-query CCDS DB by Protein ID:ENSMUSP00000153722
Original member Current member NCBI NM_001285890.1 NP_001272819.1 Accepted alive Link to Nucleotide Sequence:NM_001285890.1Link to Protein Sequence:NP_001272819.1Re-query CCDS DB by Nucleotide ID:NM_001285890Re-query CCDS DB by Protein ID:NP_001272819Link to BLAST:NP_001272819.1

Chromosomal Locations for CCDS 88861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103515369 103515421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103519949 103520062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103521306 103521488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103521653 103521719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103522045 103522161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103524308 103524448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103524798 103524898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103524990 103525115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103525236 103525337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103526263 103526383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103526607 103526688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103526984 103527092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103527545 103527675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103528222 103528325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCAAACCCTGTTCCTGTCCAGAGGAGCCACCTCCAGGGCCCCATCCTCAGGCTGCGCTACATGGTGA
AGCAGTTGGAGAATGGGGAGGTTAACATCGAGGAGCTGAAGAAAAACCTGGAATACACAGCTTCCCTGCT
GGAAGCTGTCTACATTGATGAGACAAGGCAAATCCTAGACACTGAAGATGAGCTTCGGGAACTTCGGTCA
GATGCTGTGCCTTCAGAGGTGCGGGACTGGTTGGCCTCCACCTTCACCCAGCAGACCCGAGCCAAAGGTC
GCAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCGTGCATGCTGTGCAGGCTGGGATCTTCGTGGAGCG
GATGTTCCGGAGAACGTATACCTCTGTGGGCCCCACATACTCTACTGCAGTCCACAACTGTCTCAAGAAC
CTGGACCTCTGGTGCTTTGATGTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCTCTGAGGACCATTG
TTTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCGCTTTAAGATTCCCACAGTGTTTCTGATGAGTTT
TCTGGAGGCCTTGGAGACAGGCTATGGGAAATATAAGAATCCTTACCACAACCAGATCCACGCAGCCGAC
GTGACCCAGACTGTCCATTGCTTCCTTCTCCGCACAGGCATGGTGCACTGCCTGTCAGAGATTGAGGTCT
TGGCCATCATCTTTGCTGCAGCCATCCATGACTATGAGCACACAGGCACAACCAACAGCTTCCACATTCA
GACCAAGTCAGAATGTGCCATCCTGTACAATGATCGATCGGTGCTGGAGAATCACCACATCAGCTCTGTC
TTTCGAATGATGCAGGATGATGAGATGAACATTTTTATCAATCTCACCAAGGATGAATTTGCAGAGCTGC
GGGCCCTGGTTATCGAGATGGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAA
GACAGCACTGCAGCAGTTGGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTCTGCTTCATGCTGCTGAC
ATCAGCCACCCAACTAAGCAGTGGTCAGTCCACAGCCGCTGGACCAAGGCCCTAATGGAAGAGTTCTTCC
GCCAGGGTGACAAGGAGGCAGAGCTGGGCCTGCCCTTCTCTCCACTCTGTGATCGCACTTCCACATTGGT
GGCCCAGTCCCAGATAGGTTTCATTGACTTCATTGTGGAGCCAACCTTCTCTGTGCTGACTGATGTGGCA
GAAAAGAGTGTCCAGCCCTTGGCAGATGATGATTCCAAGCCTAAAAGTCAGCCCAGCTTCCAGTGGCGCC
AGCCTTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAGTTTCCGTGCCACCTGGACCAA
GTACATTCAAGAGAACAAACAGAAGTGGAAGGAACGGGCAGCAAGTGGCATCACCAACCAGATGTCCATT
GATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAAGATGAGCACAACCAGAATGGGA
ATCTGGATTAG

Translation (516 aa):
MANPVPVQRSHLQGPILRLRYMVKQLENGEVNIEELKKNLEYTASLLEAVYIDETRQILDTEDELRELRS
DAVPSEVRDWLASTFTQQTRAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRTYTSVGPTYSTAVHNCLKN
LDLWCFDVFSLNRAADDHALRTIVFELLTRHSLISRFKIPTVFLMSFLEALETGYGKYKNPYHNQIHAAD
VTQTVHCFLLRTGMVHCLSEIEVLAIIFAAAIHDYEHTGTTNSFHIQTKSECAILYNDRSVLENHHISSV
FRMMQDDEMNIFINLTKDEFAELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKSKALSLLLHAAD
ISHPTKQWSVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVA
EKSVQPLADDDSKPKSQPSFQWRQPSLDVDVGDPNPDVVSFRATWTKYIQENKQKWKERAASGITNQMSI
DELSPCEEEAPSSPAEDEHNQNGNLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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