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Report for CCDS88812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88812.1 Public Mus musculus 15 Septin3 23 108 98 CCDS HistoryNCBI Gene:24050Re-query CCDS DB by CCDS ID:88812.1Re-query CCDS DB by GeneID:24050See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238416.2 ENSMUSP00000158597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238416.2Link to Ensembl Protein Viewer:ENSMUSP00000158597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238416Re-query CCDS DB by Protein ID:ENSMUSP00000158597
Original member Current member NCBI NM_001368785.1 NP_001355714.1 Accepted alive Link to Nucleotide Sequence:NM_001368785.1Link to Protein Sequence:NP_001355714.1Re-query CCDS DB by Nucleotide ID:NM_001368785Re-query CCDS DB by Protein ID:NP_001355714Link to BLAST:NP_001355714.1

Chromosomal Locations for CCDS 88812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82271452 82272865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82279415 82279606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283059 82283187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283677 82283758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82284372 82284509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82285787 82285904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82286437 82286532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82289195 82289294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290404 82290455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290738 82290831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82291253 82291306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGAACCACGCCTTCGCACCTGCTCCTCCGGAGATGCAGCCACACAGGGCTCCAGGCCCCAGAACATCTT
TCTCTCACAGCCACATGCTGGGGCACCACACCCACCAAAAGCTCACTGCAGATGTGTCCCCCCTCATCCC
TGTCATCAAGAAGACTGGGCGTTTGGATGCCTTCCCCCAAAGCAGTGTCCTAGAGAATTCCAAACAGCCA
AGCATTAGATCCAGGGCCTGTAGTATGTCCCAACAGGGCACTGCCACGGGGTCCCTGAGTTCCATGCCTC
CCAATAGCTTTATGCCCAGGAAACTCAGCTCTATTTCCTTAACAATACACCAGAATGTCCAAACGCGGCC
CTTAGATGCCTCACTTTCTCATTGGGAAGAATTGCCCAGTTTGCACAAGGAGGCTGTCACCCACAGAGAA
GGGAGGCTGTCTGCTTCAAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAGGACCTCCTCTGAAGGCC
ATGGGAACCCAGAACTTACCAAAGCCAGCAGAACACCCACAGGGAATAAACCTCTGGTGTCTTCATGCCT
GACTTTACCTTTCCAAGCTCAGTTCATTCAGAGTTCGTCAAGCCTCCCGGGGCCAGGTCCCATGGGACAA
GTCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACC
TCCAAAGGGCTACCTCGGCTGCAAATGTGTCTGTTGTGAGCACAAAACTAGATAAAGCCAGACATATAGG
CACAGTGGCTCTCCACAGACCGGAATTGGCTATCAATATGCCTACACTAAACCAGTCCAGACTGGTCAGA
AGCGCAGAGCTTCCTGTTCTGGATGCCAGGATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAG
GAAAAGTGACAGACTCAATTGCAGCAGGCACAGCCAGGGATTTAGCTAGAGCAGTGACAACCAAGTCAGG
CCAGGTTCCGAATTTGGTAACTGCAGCATCAGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGGGGAAC
TCAAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTT
TGGCCAGAGCCACCGTAGGCAGGCCGGACACAATGACAGATTCTCCTGCACTGGAGACAAGCAGACTAGG
TACAGCCATGGATTCAGTTGTGCTGGTCTGCCCAGACCCAGCCAGTAGTGAGACCAAGCCACACACTGTC
AACAATGGGACTATCAGAGACACGGTTACCTATGCTACCTCTCCTCAAAAGCCGAGCAGAAGCACAGACC
CAGCCCAGGACCATGGAGCTGTGGGTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCTGGACCTGGC
CCCAGAACCCAAAGGGCTCCCAGAGGCTAGGACGGACGCAGCCATGTCTGAGCTGGTACCTGAGCCCAGG
CCTAAGCCGGCGGTGCCCATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGGCTACATTGGCATTGACA
CCATTATCGAGCAGATGCGCAAGAAGACCATGAAGACTGGCTTTGACTTCAACATCATGGTCGTTGGCCA
GAGTGGACTGGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTCCCAAGTGAGCCGAAAGGCCTCCAGC
TGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGTGATAGAGGAAGGTG
GTGTCAAAATGAAGCTGACAGTCATCGACACACCAGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG
GGAGCCCATTGAGAAATACATCAACGAACAGTACGAAAAGTTCCTGAAGGAGGAGGTGAACATTGCCAGG
AAGAAACGCATCCCTGACACCCGTGTCCACTGCTGCCTCTACTTCATCTCCCCGACAGGACACTCCTTAC
GACCACTGGATCTTGAGTTCATGAAACATCTCAGCAAAGTGGTGAACATCATTCCTGTCATTGCCAAGGC
TGATACCATGACCCTGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAAAGAACTTGAAGTAAACGGC
ATTGAATTCTACCCTCAGAAGGAATTTGATGAGGATTTGGAGGACAAGACAGAGAATGACAAAATCCGGC
AGGAGAGCATGCCCTTCGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGG
GAGGAAAACACCCTGGGGGATCATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCTGCTCCGAGAC
TTCGTCATCAGGACTCACCTCCAGGACCTCAAAGAAGTAACACACAACATCCACTATGAGACTTACAGGG
CCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGAACAAAAAGCTGTGCGCCTCACTCAAGAGGTCTGG
GGAAGGTTTTAATTTATAA

Translation (822 aa):
MNHAFAPAPPEMQPHRAPGPRTSFSHSHMLGHHTHQKLTADVSPLIPVIKKTGRLDAFPQSSVLENSKQP
SIRSRACSMSQQGTATGSLSSMPPNSFMPRKLSSISLTIHQNVQTRPLDASLSHWEELPSLHKEAVTHRE
GRLSASSLPLMAHVPQVRTSSEGHGNPELTKASRTPTGNKPLVSSCLTLPFQAQFIQSSSSLPGPGPMGQ
VPSRASPGRGKCRPRGIPRSRAYLQRATSAANVSVVSTKLDKARHIGTVALHRPELAINMPTLNQSRLVR
SAELPVLDARMDLATNLPVVSKSGKVTDSIAAGTARDLARAVTTKSGQVPNLVTAASDKQESVKLLTTGN
SNVALPTSDEAKQGITRLDTVKALARATVGRPDTMTDSPALETSRLGTAMDSVVLVCPDPASSETKPHTV
NNGTIRDTVTYATSPQKPSRSTDPAQDHGAVGASTDSLKEPTSLDLAPEPKGLPEARTDAAMSELVPEPR
PKPAVPMKPVSINSNLLGYIGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASS
WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIAR
KKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNG
IEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLNHCEFALLRD
FVIRTHLQDLKEVTHNIHYETYRAKRLNDNGGLPPNKKLCASLKRSGEGFNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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