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Report for CCDS88735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88735.1 Public Mus musculus 15 Npr3 23 108 98 CCDS HistoryNCBI Gene:18162Re-query CCDS DB by CCDS ID:88735.1Re-query CCDS DB by GeneID:18162See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228489.1 ENSMUSP00000153895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228489.1Link to Ensembl Protein Viewer:ENSMUSP00000153895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228489Re-query CCDS DB by Protein ID:ENSMUSP00000153895
Original member NCBI NM_001286395.1 NP_001273324.1 Updated not alive Link to Nucleotide Sequence:NM_001286395.1Link to Protein Sequence:NP_001273324.1Re-query CCDS DB by Nucleotide ID:NM_001286395Re-query CCDS DB by Protein ID:NP_001273324
Current member NCBI NM_001286395.2 NP_001273324.1 Accepted alive Link to Nucleotide Sequence:NM_001286395.2Link to Protein Sequence:NP_001273324.1Re-query CCDS DB by Nucleotide ID:NM_001286395Re-query CCDS DB by Protein ID:NP_001273324Link to BLAST:NP_001273324.1

Chromosomal Locations for CCDS 88735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 11845177 11845288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11846298 11846382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11848469 11848604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11851428 11851522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11858617 11858752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11883298 11883464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11895682 11895796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGTGTGCCAGTGGTGACACCATTCGGAGAATCATGTTGGCGGTGCACAGACACGGCATGACCAGTGGAG
ACTACGCTTTCTTCAACATTGAACTCTTCAACAGTTCTTCCTACGGAGATGGCTCGTGGAGGAGAGGAGA
CAAACACGACTCTGAAGCTAAACAAGCATACTCGTCCCTCCAAACAGTCACCCTACTGAGGACCGTGAAA
CCTGAGTTTGAGAAGTTTTCCATGGAGGTGAAAAGTTCTGTTGAGAAACAAGGGCTCAATGAGGAGGATT
ACGTGAACATGTTTGTTGAAGGGTTCCATGACGCCATCCTCCTCTACGTTCTGGCTTTACATGAAGTACT
CAGAGCTGGCTACAGCAAGAAGGATGGGGGGAAAATCATCCAGCAGACTTGGAACAGGACATTTGAAGGT
ATCGCCGGGCAGGTGTCCATAGATGCCAACGGGGACCGGTATGGGGACTTCTCTGTGGTTGCCATGACTG
ACACTGAAGCAGGCACCCAAGAGGTCATTGGTGATTACTTTGGGAAAGAAGGCCGGTTCCAAATGCGATC
GAATGTCAAATATCCTTGGGGCCCTTTGAAACTGAGACTAGATGAGACCAGAATCGTGGAGCATACCAAC
AGCTCTCCTTGCAAATCATGTGGCCTAGAAGAATCTGCAGTGACAGGAATCGTTGTGGGGGCCCTACTAG
GTGCTGGCTTGCTAATGGCCTTCTACTTTTTCAGGAAGAAATACAGAATAACCATTGAGAGGCGAAATCA
GCAAGAGGAAAGCAACATCGGGAAGCATCGAGAGCTGCGAGAAGATTCCATCAGATCACATTTTTCGGTG
GCTTAA

Translation (281 aa):
MCASGDTIRRIMLAVHRHGMTSGDYAFFNIELFNSSSYGDGSWRRGDKHDSEAKQAYSSLQTVTLLRTVK
PEFEKFSMEVKSSVEKQGLNEEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEG
IAGQVSIDANGDRYGDFSVVAMTDTEAGTQEVIGDYFGKEGRFQMRSNVKYPWGPLKLRLDETRIVEHTN
SSPCKSCGLEESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRNQQEESNIGKHRELREDSIRSHFSV
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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