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Report for CCDS88670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88670.1 Public Mus musculus 14 Tssk4 23 108 98 CCDS HistoryNCBI Gene:71099Re-query CCDS DB by CCDS ID:88670.1Re-query CCDS DB by GeneID:71099See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226591.1 ENSMUSP00000153752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226591.1Link to Ensembl Protein Viewer:ENSMUSP00000153752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226591Re-query CCDS DB by Protein ID:ENSMUSP00000153752
Original member Current member NCBI NM_027673.3 NP_081949.1 Accepted alive Link to Nucleotide Sequence:NM_027673.3Link to Protein Sequence:NP_081949.1Re-query CCDS DB by Nucleotide ID:NM_027673Re-query CCDS DB by Protein ID:NP_081949Link to BLAST:NP_081949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081949.1 328 Q9D411-1 328 100% 0 0

Chromosomal Locations for CCDS 88670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55650349 55650573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55650901 55651115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55651489 55651852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55652266 55652448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGGGAAGGGAGACACCTCGGAAACAGCATCAGCCACCCCAGCCTATCGCTCTGTCATGGAGGAGTATG
GTTATGAGGTGGGCAAGATCATTGGCCATGGCTCCTATGGAACTGTCTATGAGGCATACTACACAAAGCA
GAAGGTCATGGTGGCTGTCAAGATCATCTCGAAGAAGAAGGCCTCTGAAGACTATCTCAACAAGTTCCTA
CCACGTGAGATACAGGTAATGAAAGTCCTACGGCACAAGTACCTCATCAACTTCTATCAGGCCATTGAGA
CCACATCCCGAGTATACATCATTTTGGAGCTGGCTCAGGGCGGTGATGTCCTCGAATGGATCCAACGATA
TGGGGCCTGTGCTGAGACCCTTGCTGGCAAGTGGTTCTCCCAGATGGCTTTGGGCATCGCCTACCTGCAC
AGCAAGGGCATCGTGCACCGGGATTTAAAGTTGGAGAACCTGTTGCTGGACAAGCGGGAGAATGTGAAGA
TATCGGACTTTGGCTTCGCCAAGATGGTGCCTTCTAGCCAGCCTGTGCATAGTAGCCCTTCTTACCGCCA
AATGAACAGCCTTTCCCACCTCAGCCAGACCTACTGTGGCAGCTTTGCTTACGCCTGCCCGGAGATCTTG
CTAGGCTTGCCCTACAACCCTTTCCTGTCTGACACCTGGAGCATGGGCGTCATCCTCTACACTCTAGTGG
TTGCACGGCTGCCCTTTGATGACACCAATCTCAAGAAGCTGCTGAGAGAAACCCAGAAGGAGGTCACTTT
CCCAGCTAACTTGACCATCTCCCAGGAGTGCAAGAACCTGATCCTCCAGCTGCTACGCCAATCTACCAAG
CGTGCCACCATCCTAGATGTCCTCAGGGACCCCTGGATGCTCAAGTTCCAGCCTGAGCAACCTTCGAATG
AAATCAGGCTGCTCGAGGCCATGTACCAACCCACCAGCTCTGCTAAACGGCACCAGTCCTTGGAAATCAC
AACCTGA

Translation (328 aa):
MGKGDTSETASATPAYRSVMEEYGYEVGKIIGHGSYGTVYEAYYTKQKVMVAVKIISKKKASEDYLNKFL
PREIQVMKVLRHKYLINFYQAIETTSRVYIILELAQGGDVLEWIQRYGACAETLAGKWFSQMALGIAYLH
SKGIVHRDLKLENLLLDKRENVKISDFGFAKMVPSSQPVHSSPSYRQMNSLSHLSQTYCGSFAYACPEIL
LGLPYNPFLSDTWSMGVILYTLVVARLPFDDTNLKKLLRETQKEVTFPANLTISQECKNLILQLLRQSTK
RATILDVLRDPWMLKFQPEQPSNEIRLLEAMYQPTSSAKRHQSLEITT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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