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Report for CCDS88493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88493.1 Public Mus musculus 13 2210408I21Rik 23 108 98 CCDS HistoryNCBI Gene:72371Re-query CCDS DB by CCDS ID:88493.1Re-query CCDS DB by GeneID:72371See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225605.1 ENSMUSP00000153096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225605.1Link to Ensembl Protein Viewer:ENSMUSP00000153096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225605Re-query CCDS DB by Protein ID:ENSMUSP00000153096
Original member NCBI NM_001081353.1 NP_001074822.1 Updated not alive Link to Nucleotide Sequence:NM_001081353.1Link to Protein Sequence:NP_001074822.1Re-query CCDS DB by Nucleotide ID:NM_001081353Re-query CCDS DB by Protein ID:NP_001074822
Current member NCBI NM_001081353.2 NP_001074822.1 Accepted alive Link to Nucleotide Sequence:NM_001081353.2Link to Protein Sequence:NP_001074822.1Re-query CCDS DB by Nucleotide ID:NM_001081353Re-query CCDS DB by Protein ID:NP_001074822Link to BLAST:NP_001074822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074822.1 324 Q3UPC7-2 324 100% 0 0

Chromosomal Locations for CCDS 88493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77174854 77174984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77183601 77183769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77192554 77193228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGATGCATTACAGGAATATTCCCATAATTCATTTGACCTGCAGTGTCTGTTAAATTCGTTTCCCGGAG
ATTTGGAGTTTAAGCAGATCTTCAGTGACATTGGAGAACAGATGGAGCAAAATGCTGCAAGTATAGAACA
TTGCATTGAAGAAATACAGTCTGAAGTAAACAAGCTCTGTCCAGATGCACAGCTACAAACAACAAGTGAC
TGCTTCAAATGGCTAACTAGTTATAATTATAATTTATCTAAGTCACCATCCATTTCCCATGGAGATTTAA
TAAACTTCCTCAAAACAATGAAAGATTTATTGAATAATGAAGACAACCATGAAGAAATGATTCTGGATTT
ACTCTGGGACCTCTCCTGTCAAAGCAGCATCTCTTTCCTGTCCTCTCTGGGTGGGACAACCTTCTGTCAC
CTGTCCAGGACTTCCATACATTCTGTTGAAGATTTCTCCTCTGTGGATGTCAAGTCTGTTTGGGATGATG
TAAGATTACATCTTCGACGATTCTTAGTAAACAGGTTAGAAAGATATAATGAGATAAACAATTCACAGCA
AAAAATTGAACTGAAAAGTCAATGTATGAAGCAATTCCTCTTGCTCTACTCAGAATCAGAAGTGCTTGTC
AAGTACCAAAGCATCCAGAAGAGACTGCTGGATACATTTCTGCAAGACTCCTTTCCTTCGTGCAACAGAG
AATCAGATTTAGAAAGAATTGTGTGTGGATACCAAAGTACTATGCTCATGTTATATTCAATGATAAAAGA
GGATTTTAATGTACTATGTGAAATTTTAGCTCCATCATCACTGGTGCAGTTCTTTAATGAAACTTACCTG
GATACGGTTACAGAAGAAATGACAAAAATTCTTGAATATTTTTGTGAGCTGCAGTTCAAAGAAAATGCTG
TTCCTGTAGTTAAAACAAGCAAGAGCTGCAACAAGCGCAGAGGAGCAGTGCATGCTTTGGGTTAG

Translation (324 aa):
MDALQEYSHNSFDLQCLLNSFPGDLEFKQIFSDIGEQMEQNAASIEHCIEEIQSEVNKLCPDAQLQTTSD
CFKWLTSYNYNLSKSPSISHGDLINFLKTMKDLLNNEDNHEEMILDLLWDLSCQSSISFLSSLGGTTFCH
LSRTSIHSVEDFSSVDVKSVWDDVRLHLRRFLVNRLERYNEINNSQQKIELKSQCMKQFLLLYSESEVLV
KYQSIQKRLLDTFLQDSFPSCNRESDLERIVCGYQSTMLMLYSMIKEDFNVLCEILAPSSLVQFFNETYL
DTVTEEMTKILEYFCELQFKENAVPVVKTSKSCNKRRGAVHALG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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