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Report for CCDS88369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88369.1 Public Mus musculus 12 Zfp410 23 108 98 CCDS HistoryNCBI Gene:52708Re-query CCDS DB by CCDS ID:88369.1Re-query CCDS DB by GeneID:52708See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222258.1 ENSMUSP00000152441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222258.1Link to Ensembl Protein Viewer:ENSMUSP00000152441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222258Re-query CCDS DB by Protein ID:ENSMUSP00000152441
Original member Current member NCBI NM_001252582.2 NP_001239511.1 Accepted alive Link to Nucleotide Sequence:NM_001252582.2Link to Protein Sequence:NP_001239511.1Re-query CCDS DB by Nucleotide ID:NM_001252582Re-query CCDS DB by Protein ID:NP_001239511Link to BLAST:NP_001239511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239511.1 347 Q8BKX7-2 347 100% 0 0

Chromosomal Locations for CCDS 88369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84321959 84321991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84322884 84323019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84325571 84325789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84327279 84327470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84329802 84329952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84331635 84331816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84332935 84333065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTTATCAGATGAGTTAGAATCCAAACCAGAGCTCCTGGTTCAGTTTGTTCAGAATACCTCCATCCCCC
TGGGACAAGGGCTAGTAGAATCAGAAGCTAAAGACATTACTTGCTTATCCCTCCTTCCAGTGACCGAGGC
CTCAGAATGCAGCCGACTAATGTTACCAGATGAAACTCCAAATCATGCTAATTCCTCCAAGGAGGTCCCT
TCTTCAGCTGTTTTGAGGAGCCTTCAGGTGAATGTGGGCCCAGACGGAGAAGAGACAAGGGCTCAGACTG
TACAGAAGTCCCCAGAGTTCCTGACCACACCAGAGTCGCCTAGCTTGTTGCAAGATCTACAGCCAAGTGA
TAGCACTTCCTTCATTCTTCTGAACCTAACGAGAGCAGGGCTGGGCTCTTCAGCTGAGCACTTTGTGTTT
GTTCAGGATGAGACAGAGGACTCAGGGGCTGACTTCCTCTCTGCTGAGAGCACAGACAGCAGTATCCCAT
GGTTCCTCCGGGTTCAGGAACTGGCCCATGACAGTCTGATTGCGGCTACTCGTGCACAGCTGGCCAAGAA
TGCAAAAACTGGCAGCAATGGAGAAAATGTCCACCTTGGCTCTGGTGATGGGCAACCAAAAGACTCTGGT
CCCCTTCCTCAAGCGGAGAAGAAGCTCAAGTGCACAGTTGAAGGCTGTGACCGGACATTTGTGTGGCCAG
CTCACTTCAAGTACCACCTTAAAACTCACCGAAATGAGCGCTCCTTCATCTGCCCTGCAGAAGGTTGTGG
GAAAAGCTTTTATGTGCTGCAGAGGCTGAAGGTGCACATGAGGACACACAATGGGGAGAAACCCTTTATG
TGCCACGAGTCTGGGTGTGGTAAGCAGTTCACTACAGCTGGGAACCTGAAGAACCACCGGCGCATCCACA
CAGGAGAGAAGCCTTTTCTCTGTGAAGCCCAGGGATGTGGCCGTTCCTTTGCTGAGTATTCAAGCCTCCG
GAAACATCTGGTAGTTCACTCAGGTACGAGAACCTGTGCCATTTGTAGACCTCAAATACAGTAA

Translation (347 aa):
MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLMLPDETPNHANSSKEVP
SSAVLRSLQVNVGPDGEETRAQTVQKSPEFLTTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHFVF
VQDETEDSGADFLSAESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTGSNGENVHLGSGDGQPKDSG
PLPQAEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNERSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFM
CHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGTRTCAICRPQIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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