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Report for CCDS88341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88341.1 Public Mus musculus 12 Mia2 23 108 98 CCDS HistoryNCBI Gene:338320Re-query CCDS DB by CCDS ID:88341.1Re-query CCDS DB by GeneID:338320See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219140.2 ENSMUSP00000151482.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219140.2Link to Ensembl Protein Viewer:ENSMUSP00000151482.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000219140Re-query CCDS DB by Protein ID:ENSMUSP00000151482
Original member Current member NCBI NM_001329047.2 NP_001315976.1 Accepted alive Link to Nucleotide Sequence:NM_001329047.2Link to Protein Sequence:NP_001315976.1Re-query CCDS DB by Nucleotide ID:NM_001329047Re-query CCDS DB by Protein ID:NP_001315976Link to BLAST:NP_001315976.1

Chromosomal Locations for CCDS 88341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59095800 59095914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59101471 59101604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59104475 59104561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59107836 59109051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59119374 59119556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59119707 59119807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59136064 59136195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137581 59137602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137698 59137786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59144699 59144770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146336 59146362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146847 59146957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59147852 59147923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59149464 59149568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59154356 59154478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59158253 59158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59159591 59159637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59160176 59160266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59162881 59163019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59168934 59169035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170258 59170318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170957 59170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59172525 59172592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59174106 59174188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59176331 59176459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59179850 59180008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59184187 59184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59185729 59185787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59188311 59188545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59189636 59189799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4194 nt):
ATGGCGGAAGTCAGTGTTCAAAGAATCCTTCTTTTGGTTGTTTCTCTGGCCAAGTGTCTGGAGGGTACAA
AGTTGCTGGCACACCTTAAGAAGTGTGGTGACTTGGAATGTGAAACTTTGATCAGCCGAGTCTTAGCCCT
GAGAGATTACACAGGACCCGACTGTCGGTACCTGAACTTCACTACGGGAGAAGAGATATCTGTTTATGTT
AAACTTGGAGGAGACAGAGAAGATTTGTGGGCAGGAAGCAAAGGAAAAGACTTTGGATTTTTTCCCAGAG
ATGCAGTCGAGATTGAAGAGGTGTTCATATCTGAAGAAGTCGAAATGCCAACTAAAGAGTCTGACTTTCT
TTGTCTTCTTGGAGAAGGCTACATATTTGGAAGTGAACAGAGTGAATTAAACAGTGAAGATGATGAAGAA
CATATGTACCCATATGAAAAAGATGAAGACCAAAACTATAATATATATGAGGGTGATTTTCAGCCAGAAC
CTGACTTATATGCAGCTGCTGAAGGGACTTTGTTGGAGGACCAAATTCCAGCATCCGAAGCTCCTGATGA
TTTCCGATTCTCCAGTGAGTGGAAGGCCTGGGAAGGGGCTGGAAGCCAGGGTGGAGGGGAGCAGGATTAC
ACTGCAGACTCTGACCAAGACTTGCCATCCCTCAGTAAGCCAGAAAGGCAAGGATGGTTTGGCCTGGGGA
CAGAAGAAGCTGAAGAGAAGGTTTTCGAATCAGATACTGAACCTACACAAGAATTAGCACTAGAAGAGGA
GAGTGACCTGGAGAAATTACACAGTGGCGAACCCCAAGTGGAACTTGAGCAAGAGCCAAAATCAGAGACA
TTAGAATTCAGTTCAGTGCCGGACGAAGAGTATGAGCTAGAATCTGAGACGGAGAGTATCCTCAAACCCC
AAGCTTCTGGCTGGTTTGGTGAGGGCCTTACAAGTTATTTAGGTTTTGGAAATGAGGAGGCAGGACTTGA
GTTATTGTCCAAAGAAAGCAATCCACCATTACAAGATATTCCCAGCTCTGTTCCACCAGATGAAGAAGTC
CCGGCTCCATGCAGAGAAATCTCAACAGACAAGGAAGATGCAGTCATTAATGATAGCTCGGTTCTCAGTC
CAAGCTGGTTTTACTATGGATTTGGTATGCTAGGCTTTACAAATGCCGACGAAGACAACATTGTTTCAGA
CAAAGGAGAAAATGAAGATGGTGAGGTAGATAACCTCAAACATCCTATAGGAAGTGACTTTGACCCTGAA
AAGGAACAAGAAAGGAAAATAGTAACTGTGGAAACCGAAGACCAGGCAGGTACAGAAAGCGTCTTGGAGA
AGACAGACGAGTCTGGTTCCATGCAGTATCTGAAGAAGTTCTTTGATAATCCTTGGGGCTTCCAGAGTCT
CCCAGAGGACACAGAATTACCATTTTCCAAAAAGATGCTGGATCAAGATGATATAGTAGAAAATGACAAA
ATTGAAGAACTTTCCACTGAAAATTCTCCCACAGGTAGCATGAAAGACCCCGTGATGCTGGCGAGCAGAT
ACGTTCTGTCAGATATAGACTCTGAAGTGGAGTTACCCATGGAAGAACATGAAGGGGTACATTTCAAACC
CTCATCTTCTAAAAGGAACGAGGACGATTCAAATTCCTGGGCGGACCCTGAAGAGCTCTCTGTGGCACAA
ACAGACGGGTCTGCGGAAGGAGCCTTGCTTGATACACAGCTAGTTTCTCCAAAAGAGCATGCTGCAGACT
TTCAGCTTCTGAAGTATTTACTACAAATTGATGTCTACGGTTTCATGAGCTCTGCTCTTTCACCAATTGA
AATTCTTTTAGAAAGTGTTGTGGCAGCATTGCCTGAAGATATGAGAGCAGACTTTAATCCCAGTGGTTTT
TCGTTGGAATTGGCAGTATGTGTGCTTTCCGTTGGACTGCTTGCCGTGGTCTTGTTTCTGTGGCGAGGCT
TCCGATCAATTCGAAGCCGATTTTATGTGGGGAGAGAAAAGAAACTTGCTCTTGAGCTTTCTGCACTAAT
TGAAGAAAAATGTAAACTGCTTGACAAAGTCAGCATTGTTCAAAAGGAGTATGAAGGCTTAGAGTCATCT
TTAAAGGAGGCCAGCTTTGAGAAGGAGTCAACAGAAGCACAAAGTTTGGAGTTTGTTGAAGGATCACAAA
TATCAGAGGCCACCTATGAAAATCTGGAACAATCCAAATCTAAACTTGAAGATGAAATACTACTCCTAGA
GGAAAAGCTGGAAGAAGAGCGAGCTAAACATTCTGAACAAGACGAGCTGATGGCTGATATTTCAAAAAGG
ATACAGTCCCTAGAAGATGAATCAAAATCTCTCAAATCGCAAGTAGCTGAAGCCAAAACAACCTTTAGAA
TATTTGAAATCAATGAAGAGCGACTCAAGGGAGCAATAAAAGATGCCTTGAATGAAAATTCTCAGCTTCA
GGAAAGCCAGAAACAGCTTTTACAGGAAACTGAAATGATGAAAGAACAAGTGAATGATCTCGATAAACAG
AAAGTGGCATTGGAAGAGTCCAGAGCACAGGCGGAACAAGCTCTGAGTGAGAAGGAGAGTCAGATTGAGA
CTCTGGTCACGAGCCTGCTAAAGATGAAGGATTGGGCTGCTGTGCTTGGAGAAGCAGATGATGGGAATCT
GGACTTGGACATGAAGAGTGGCCTAGAAAACACTGCTGCCTTAGATAATCAGCCAAAGGGCGCTTTGAAG
AAGCTGATTTATGCAGCTAAGTTAAATGCTTCTTTAAAAGCCTTGGAAGGAGAACGAAATCAAGTTTACA
CTCAGTTATCTGAAGTGGATCAAGTAAAAGAAGACCTTACAGAGCATATCAAAAGTCTTGAGTCTAAACA
AGCATCTTTGCAGTCAGAAAAGACAGAGTTTGAAAGTGAGAGCCAGAAACTTCAGCAGAAACTGAAAGTG
ATAACCGAGCTGTACCAAGAAAATGAAATGAAACTTCACAGGAAATTAACAGTAGAAGAAAATTACCGAT
TAGAGAAAGAAGAAAAACTTTCCAAAGTAGATGAGAAAATCAGCCATGCGACCGAGGAGCTGGAGACCTG
CAGGCAGCGTGCCAAGGATCTTGAAGAAGAGCTGGAGAGAACAATTCATTCTTACCAGGGGCAGGTTATT
TCTCATGAAAAAAAAGCACATGATAATTGGCTGGCAGCTCGGACTCTTGAAAGAAATCTCAATGATTTAA
GAAAAGAAAATGCCCACAACAGACAAAAATTAACTGAAACAGAGTTTAAATTTGAACTTTTAGAAAAAGA
TCCTTATGCACTTGATGTTCCAAACACAGCATTTGGCAGAGAGCACTCCCCATATGGTCCCTCACCATTG
GGCCGACCTCCATCTGAAACGAGAGCTTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTAAGACTCT
CACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCACGAGGCCCTGAGAACCTTCTGGACCATCAGATGAA
CACTGAAAGAGGAGAGTCAAGCTATGACAGATTATCTGATGCTCCCAGAGCACCTTCCGACAGGTCCCTG
TCACCTCCGTGGGAACAAGATCGAAGGATGACAGCCCATCCGCCACCAGGCCAACCATATTCTGATCCAG
CTCTACAAAGGCAAGATCGGTTTTATCCTAATTCTGGTAGACTCTCTGGACCAGCAGAACTCAGAAGTTA
TAATATGCCCTCTTTGGATAAAGTGGATGGGCCAGTACCCTCAGAAATGGAGTCCAGTGGAAACGGTACC
AAAGATAATCTTGGTAACTCTAATGTGCCTGATTCTCCTATCCCTGCTGAATGCGAAGCAGCTGGCCGTG
GCTTCTTCCCTCCACCCTTTCCTCCAGTCAGAGACCCATTGTTTCCAGTGGATCCAAGGAGCCAGTTCAT
GAGAAGGGGCCCCTCTTTCCCCCCACCTCCTCCAGGAAGCATCTATGCAGCTCCTCGAGATTATTTTCCA
CCAAGGGACTTCCCTGGCCCACCACTTCCTCCGTTCCCAGGGAGAACTGTGTACGCACCGAGGGGCTTTC
CACCTTACCTTCCCCCCAGAGCTGGGTTCTTCCCCCCACCCCCACATCCTGAAAGTAGAAGTGAGCTCCC
CCCAGACTTGATTCCGCCTTCAAAAGAGCCTGCAGCTGACCCTCCAGAAACACAGGAGGCCTGA

Translation (1397 aa):
MAEVSVQRILLLVVSLAKCLEGTKLLAHLKKCGDLECETLISRVLALRDYTGPDCRYLNFTTGEEISVYV
KLGGDREDLWAGSKGKDFGFFPRDAVEIEEVFISEEVEMPTKESDFLCLLGEGYIFGSEQSELNSEDDEE
HMYPYEKDEDQNYNIYEGDFQPEPDLYAAAEGTLLEDQIPASEAPDDFRFSSEWKAWEGAGSQGGGEQDY
TADSDQDLPSLSKPERQGWFGLGTEEAEEKVFESDTEPTQELALEEESDLEKLHSGEPQVELEQEPKSET
LEFSSVPDEEYELESETESILKPQASGWFGEGLTSYLGFGNEEAGLELLSKESNPPLQDIPSSVPPDEEV
PAPCREISTDKEDAVINDSSVLSPSWFYYGFGMLGFTNADEDNIVSDKGENEDGEVDNLKHPIGSDFDPE
KEQERKIVTVETEDQAGTESVLEKTDESGSMQYLKKFFDNPWGFQSLPEDTELPFSKKMLDQDDIVENDK
IEELSTENSPTGSMKDPVMLASRYVLSDIDSEVELPMEEHEGVHFKPSSSKRNEDDSNSWADPEELSVAQ
TDGSAEGALLDTQLVSPKEHAADFQLLKYLLQIDVYGFMSSALSPIEILLESVVAALPEDMRADFNPSGF
SLELAVCVLSVGLLAVVLFLWRGFRSIRSRFYVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESS
LKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKR
IQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQ
KVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALK
KLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV
ITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVI
SHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVPNTAFGREHSPYGPSPL
GRPPSETRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLDHQMNTERGESSYDRLSDAPRAPSDRSL
SPPWEQDRRMTAHPPPGQPYSDPALQRQDRFYPNSGRLSGPAELRSYNMPSLDKVDGPVPSEMESSGNGT
KDNLGNSNVPDSPIPAECEAAGRGFFPPPFPPVRDPLFPVDPRSQFMRRGPSFPPPPPGSIYAAPRDYFP
PRDFPGPPLPPFPGRTVYAPRGFPPYLPPRAGFFPPPPHPESRSELPPDLIPPSKEPAADPPETQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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