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Report for CCDS88262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88262.1 Public Mus musculus 11 Ubtf 23 108 98 CCDS HistoryNCBI Gene:21429Re-query CCDS DB by CCDS ID:88262.1Re-query CCDS DB by GeneID:21429See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128016.1 ENSMUSP00000131930.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128016.1Link to Ensembl Protein Viewer:ENSMUSP00000131930.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128016Re-query CCDS DB by Protein ID:ENSMUSP00000131930
Original member NCBI NM_001362552.1 NP_001349481.1 Updated not alive Link to Nucleotide Sequence:NM_001362552.1Link to Protein Sequence:NP_001349481.1Re-query CCDS DB by Nucleotide ID:NM_001362552Re-query CCDS DB by Protein ID:NP_001349481
Current member NCBI NM_001362552.2 NP_001349481.1 Accepted alive Link to Nucleotide Sequence:NM_001362552.2Link to Protein Sequence:NP_001349481.1Re-query CCDS DB by Nucleotide ID:NM_001362552Re-query CCDS DB by Protein ID:NP_001349481Link to BLAST:NP_001349481.1

Chromosomal Locations for CCDS 88262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102313862 102314053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314139 102314222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314864 102315039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102316349 102316406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCC
AGGAAGATATGCTGACTCTGCTGGAATGCATGAAGAACAACCTCCCATCCAACGACAGCTCCAAGTTCAA
AACCACAGAGTCGCACATGGATTGGGAAAAAGTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAGCTC
AAATGGGTGGAGATTTCTAACGAGGTAAGGAAGTTCCGTACATTGACAGAATTGATCCTTGATGCTCAGG
AACATGTTAAAAACCCTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATTTTCCAAAGAAACCTCTCAC
CCCTTACTTCCGCTTCTTCATGGAGAAGCGGGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAACCTG
GACCTGACTAAGATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAAGAAGAAGGTGGGGGGAGGGGGGG
CTCAGGTGTGGGGAGGGTAG

Translation (169 aa):
MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKL
KWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNL
DLTKILSKKYKELPEKKKVGGGGAQVWGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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