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Report for CCDS88244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88244.1 Public Mus musculus 11 Med1 23 108 98 CCDS HistoryNCBI Gene:19014Re-query CCDS DB by CCDS ID:88244.1Re-query CCDS DB by GeneID:19014See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092735.11 ENSMUSP00000090411.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092735.11Link to Ensembl Protein Viewer:ENSMUSP00000090411.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092735Re-query CCDS DB by Protein ID:ENSMUSP00000090411
Original member NCBI NM_001361950.1 NP_001348879.1 Updated not alive Link to Nucleotide Sequence:NM_001361950.1Link to Protein Sequence:NP_001348879.1Re-query CCDS DB by Nucleotide ID:NM_001361950Re-query CCDS DB by Protein ID:NP_001348879
Current member NCBI NM_001361950.2 NP_001348879.1 Accepted alive Link to Nucleotide Sequence:NM_001361950.2Link to Protein Sequence:NP_001348879.1Re-query CCDS DB by Nucleotide ID:NM_001361950Re-query CCDS DB by Protein ID:NP_001348879Link to BLAST:NP_001348879.1

Chromosomal Locations for CCDS 88244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98152714 98152963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98158329 98158469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98160937 98161042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98161144 98161239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98163800 98164001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98166256 98166374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98166699 98166823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98167519 98167630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98169363 98169452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98170948 98171021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98171696 98171770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98173221 98173292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98179112 98179140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98180017 98180149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98180254 98180308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98183842 98183920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98189182 98189288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98193059 98193083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGAAGGCTCAGGGGGAAACCGAGGACTCAGAGAGGCTGAGTAAGATGAGCTCCCTCCTGGAACGGCTCC
ATGCAAAATTTAACCAGAACAGACCTTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTAATGGAGAAGAG
GGTCGTAATGAGTTCTGGAGGGCATCAGCATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAA
GTAACATCTTTGCCAGCAATGACTGATCGTTTGGAATCTATAGCCAGACAGAATGGACTGGGCTCTCACC
TCAGTGCCAGTGGCACTGAGTGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGC
AGGACAGCTTTGTGATGTCAAAGTGGCTCACCATGGGGAGAATCCTGTGAGCTGTCCAGAGCTTGTACAG
CAGTTAAGGGAAAAGAATTTTGAGGAATTTTCCAAGCATCTTAAGGGTCTTGTTAATCTGTATAATCTCC
CAGGGGACAACAAACTGAAGACTAAAATGTATCTGGCTCTCCAATCCTTAGAACAGGACCTTTCTAAAAT
GGCTATTATGTACTGGAAGGCAACCAACGCCGCTCCCTTGGATAAGATTCTTCATGGAAGTGTTGGTTAT
CTCACCCCGCGGAGTGGGGGTCATTTAATGAATATGAAATACTATGCCTCTCCATCTGACCTGCTGGATG
ATAAGACTGCCTCTCCTATCATTTTGCATGAAAAGAATGTTCCTCGGTCTTTGGGAATGAATGCCTCAGT
GACAATTGAAGGAACCTCTGCTATGTACAAACTCCCAATTGCCCCATTAATTATGGGGTCACACCCAGCT
GACAACAAATGGACCCCTTCTTTCTCCGCAGTCACTAGTGCCAACAGTGTTGATCTTCCTGCGTGTTTCT
TCTTGAAATTTCCCCAGCCAATTCCAGTATCTAAAGCATTTGTTCAGAAACTGCAAAATTGCACAGGAAT
CCCGTTGTTTGAGACTCCGCCCACTTACCTGCCCCTGTATGAACTCATCACTCAGTTTGAGCTGTCAAAG
GATCCTGACCCTTTACCTTTGAATCACAACATGCGATTTTACGCTGCTCTTCCAGGTCAGCAGCACTGCT
ATTTTCTCAATAAAGATGCTCCTCTTCCTGATGGTCAGAGCCTGCAGGGAACACTGGTCAGCAAAATCAC
CTTCCAGCACCCTGGCCGAGTTCCTCTTATCTTGAATATGATCAGACACCAAGTGGCCTATAACACTCTA
ATTGGAAGCTGTGTCAAAAGAACTATTTTAAAAGAAGATTCTCCTGGGCTCCTCCAGTTTGAAGTGTGTC
CTCTCTCAGAATCTCGCTTCAGTGTATCTTTTCAGCACCCTGTGAATGACTCCCTTGTGTGTGTGGTGAT
GGATGTGCAAGACTCAACACATGTGAGCTGTAAACTCTACAAGGGGCTGTCAGATGCACTAATCTGTACA
GACGACTTCATTGCCAAAGTTGTTCAAAGATGTATGTCCATTCCTGTGACGATGAGGGCTATTCGGAGGA
AGGCTGAAACCATACAGGCTGACACCCCAGCACTGTCTCTCATTGCAGAGACAGTTGAAGACATGGTGAA
AAAGAACCTGCCCCCGGCTAGCAGCCCAGGGGTGGAGGAGAAGCGGCAGGATAAACCAAGCCTGGGACAC
CTCCCTCCCATCCAGGTGTGCTCACCCTCCTGTTTGAAAGACGGCAAGGACATGAAGTCAACGTGTACCT
ATTTGCTGCTGCTGCTGCTGCTGGAGTTTATGGTTTTTTTTTTCTTTTTTTTGACCTATTCTTCTGTCTT
TGGGCTTCATGTTAAGGGTCTTTGGACAAAAATCTGCTCTGATGTACAAGAATATTTCAGTGTATCTTAA

Translation (629 aa):
MKAQGETEDSERLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALK
VTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQ
QLREKNFEEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAAPLDKILHGSVGY
LTPRSGGHLMNMKYYASPSDLLDDKTASPIILHEKNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPA
DNKWTPSFSAVTSANSVDLPACFFLKFPQPIPVSKAFVQKLQNCTGIPLFETPPTYLPLYELITQFELSK
DPDPLPLNHNMRFYAALPGQQHCYFLNKDAPLPDGQSLQGTLVSKITFQHPGRVPLILNMIRHQVAYNTL
IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICT
DDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGVEEKRQDKPSLGH
LPPIQVCSPSCLKDGKDMKSTCTYLLLLLLLEFMVFFFFFLTYSSVFGLHVKGLWTKICSDVQEYFSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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