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Report for CCDS87955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87955.1 Public Mus musculus 10 Lrp11 23 108 98 CCDS HistoryNCBI Gene:237253Re-query CCDS DB by CCDS ID:87955.1Re-query CCDS DB by GeneID:237253See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130590.7 ENSMUSP00000121704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130590.7Link to Ensembl Protein Viewer:ENSMUSP00000121704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130590Re-query CCDS DB by Protein ID:ENSMUSP00000121704
Original member NCBI NM_001359743.1 NP_001346672.1 Updated not alive Link to Nucleotide Sequence:NM_001359743.1Link to Protein Sequence:NP_001346672.1Re-query CCDS DB by Nucleotide ID:NM_001359743Re-query CCDS DB by Protein ID:NP_001346672
Current member NCBI NM_001359743.2 NP_001346672.1 Accepted alive Link to Nucleotide Sequence:NM_001359743.2Link to Protein Sequence:NP_001346672.1Re-query CCDS DB by Nucleotide ID:NM_001359743Re-query CCDS DB by Protein ID:NP_001346672Link to BLAST:NP_001346672.1

Chromosomal Locations for CCDS 87955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7590052 7590613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7596104 7596264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7598707 7598848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7602829 7602954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7604174 7604383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7608548 7608639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7623630 7623653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGCCACAAGGGGAGGAGGACCGGGCCCCGGCTTCCGGCACCGCGCGCTCCGCGGGCTGCTGCTGCTCT
GCCTCTGGCTGCCCGGCAGCCGGCCCGGGGAGCCCGCCGCTCCGTCGTCCGGAGTGGATAGGCTGCTTCA
GGACTTTCGCCGGCAGCTACAGCGGGCACGGCCTCGCGAGGAGCTAGAGCCGGAGCTACTGGGCGGCCCG
CGGGAGGATTGCCCGGGTGCGGGCGGTACGGCGGTCTACCGGGCGGTGCCCGATACCATCATCCGCACCC
AGGATTCCATCGCGGCGGGAGCCAGCTTCCTGCGCGCACCCGGGAGCGTGCGGGGTTGGCGGCAGTGCGT
GACGGCCTGCTGCTCCGAGCCGAGCTGCTCGGTGGCAGTGGTGCAGCTGCCCCGGGGGCCCAGCGTGCCC
GCACCTATGCCCGCACCCCGCTGCTACCTGTTCAACTGCACGGCGCGCGGCCGCAGCGTCTGCAAGTTCG
CGCCACTCCGCGGGTACCGCACTTACACCCTCAGTCGCGCCGAGGACGCCGCTGGGATCCCTCCCCGGCC
AGATGAGGACAAGCCTCCCGTTAGCAAGGCTGGGAAGGATGTGGTTTTACATCTGCCCACAGACGGGGTA
GTTCTAGATGGTCGAGAAAGCTCGGACGACCACGCCATTGTCCTTTATGAGTGGACGCTGCAGCAGGGTG
ACCCATCGTCAGTGGACATGAAGGTGCCTCAGCCAGGAACCCTGAGGCTGTCCCGCCTGAAGGAAGGAGC
TTACATCTTCCAGCTGACTGTGACTGACTCCGTGGGTCAGAGAAGCTCCGATAACGTCTCTGTCACTGTG
CTTCCCAGGCCCTACTCCACGGGAGGATGCTCCAGTGCTTGCTCGCGCTACCATTTCTTCTGTGACAGTG
GCTGCTGTATTGACATAGCGTTGGCTTGTGATGGCGTGAGGCAGTGTCCCGACGGGTCTGATGAAGACTT
CTGTCAAAACTTGGCTCTTGACCGCAAGTTGGTGACACACACAGTGGCTACTTCTGCCCAGCCAGGAGCC
ATGGGATTAAATGAAGGTGAAGGAGACCCCAAGTTGGAAAAATCCCAGAGAGCCACTACCCACAACCAAC
CCGCTACTGTATCCCACCCAGAGACGAGGATCCACTCCACCCAGAAGGCGCCAGAGAGTCAGATCAATCC
TGTCCAGCCAGCAATTCCTCAGGAAAGAACCAAGAAGAAGGAAATTATGATCTCAAGTCCAAGAGTGGCC
AAGCAGGAGGGGAGCACCCGGCCCCGGAAGCAGGTGCGGTGCTACCTCTGGCATTAG

Translation (438 aa):
MATRGGGPGPGFRHRALRGLLLLCLWLPGSRPGEPAAPSSGVDRLLQDFRRQLQRARPREELEPELLGGP
REDCPGAGGTAVYRAVPDTIIRTQDSIAAGASFLRAPGSVRGWRQCVTACCSEPSCSVAVVQLPRGPSVP
APMPAPRCYLFNCTARGRSVCKFAPLRGYRTYTLSRAEDAAGIPPRPDEDKPPVSKAGKDVVLHLPTDGV
VLDGRESSDDHAIVLYEWTLQQGDPSSVDMKVPQPGTLRLSRLKEGAYIFQLTVTDSVGQRSSDNVSVTV
LPRPYSTGGCSSACSRYHFFCDSGCCIDIALACDGVRQCPDGSDEDFCQNLALDRKLVTHTVATSAQPGA
MGLNEGEGDPKLEKSQRATTHNQPATVSHPETRIHSTQKAPESQINPVQPAIPQERTKKKEIMISSPRVA
KQEGSTRPRKQVRCYLWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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