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Report for CCDS87016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87016.1 Public Homo sapiens 22 PISD 24 110 108 CCDS HistoryNCBI Gene:23761Re-query CCDS DB by CCDS ID:87016.1Re-query CCDS DB by GeneID:23761See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87016.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439502.7 ENSP00000391739.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439502.7Link to Ensembl Protein Viewer:ENSP00000391739.2Re-query CCDS DB by Nucleotide ID:ENST00000439502Re-query CCDS DB by Protein ID:ENSP00000391739
Original member Current member NCBI NM_001326411.2 NP_001313340.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001326411.2Link to Protein Sequence:NP_001313340.1Re-query CCDS DB by Nucleotide ID:NM_001326411Re-query CCDS DB by Protein ID:NP_001313340Link to BLAST:NP_001313340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313340.1 409 Q9UG56-3 409 100% 0 0

Chromosomal Locations for CCDS 87016.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31619612 31619836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31620553 31620713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31620996 31621142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31621334 31621472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31621649 31621885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31648101 31648276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31650699 31650778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31662144 31662208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGCGACGTCCGTGGGGCACCGATGTCTGGGATTACTGCACGGGGTCGCGCCGTGGCGGAGCAGCCTCC
ATCCCTGTGAGATCACTGCCCTGAGCCAATCCCTACAGCCCTTACGGAAGCTGCCTTTTAGAGCCTTTCG
CACAGATGCCAGAAAAATCCACACTGCCCCTGCCCGAACCATGTTCCTGCTGCGTCCCCTGCCCATTCTG
TTGGTGACAGGCGGCGGGTATGCAGGGTACCGGCAGTATGAGAAGTACAGGGAGCGAGAGCTGGAGAAGC
TGGGATTGGAGATTCCACCCAAACTTGCTGGTCACTGGGAGGTGGCTTTGTACAAGTCAGTGCCAACGCG
CTTGCTGTCACGGGCCTGGGGTCGCCTCAATCAGGTGGAGCTGCCACACTGGCTGCGCAGGCCCGTCTAC
AGCCTGTACATCTGGACGTTTGGGGTGAACATGAAAGAGGCCGCTGTGGAGGACCTGCATCACTACCGCA
ACCTCAGCGAGTTCTTCCGGCGCAAGCTGAAGCCGCAGGCCCGGCCTGTCTGTGGCCTGCACAGCGTGAT
TAGCCCATCGGATGGAAGGATCCTCAACTTTGGGCAGGTGAAGAACTGTGAGGTGGAGCAGGTAAAGGGG
GTCACCTACTCCCTGGAGTCGTTCCTGGGCCCGCGTATGTGCACAGAGGACCTGCCCTTCCCACCAGCCG
CGTCGTGTGACTCCTTCAAGAACCAGCTGGTCACCCGGGAAGGGAATGAGCTCTATCACTGTGTCATCTA
CCTGGCCCCTGGGGACTACCACTGCTTCCACTCCCCCACCGACTGGACTGTGTCCCACCGGCGCCACTTC
CCAGGCTCCCTGATGTCAGTGAACCCTGGCATGGCTCGCTGGATCAAAGAGCTCTTCTGCCATAACGAGC
GGGTGGTCCTGACGGGGGACTGGAAACATGGCTTCTTCTCACTGACAGCTGTGGGGGCCACCAACGTGGG
CTCCATTCGCATCTACTTTGACCGGGACCTGCACACAAACAGCCCAAGGCACAGCAAGGGCTCCTACAAT
GACTTCAGCTTCGTGACGCACACCAATAGAGAGGGCGTCCCCATGCGTAAGGGCGAGCACCTGGGCGAGT
TCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCCCCCAAGGACTTCAATTTCCAGCTGAAAACAGG
ACAGAAAATCCGCTTTGGGGAAGCCCTGGGCTCGCTCTAG

Translation (409 aa):
MATSVGHRCLGLLHGVAPWRSSLHPCEITALSQSLQPLRKLPFRAFRTDARKIHTAPARTMFLLRPLPIL
LVTGGGYAGYRQYEKYRERELEKLGLEIPPKLAGHWEVALYKSVPTRLLSRAWGRLNQVELPHWLRRPVY
SLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNFGQVKNCEVEQVKG
VTYSLESFLGPRMCTEDLPFPPAASCDSFKNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRHF
PGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFSLTAVGATNVGSIRIYFDRDLHTNSPRHSKGSYN
DFSFVTHTNREGVPMRKGEHLGEFNLGSTIVLIFEAPKDFNFQLKTGQKIRFGEALGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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