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Report for CCDS86243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86243.1 Public Homo sapiens 11 CCDC82 24 110 108 CCDS HistoryNCBI Gene:79780Re-query CCDS DB by CCDS ID:86243.1Re-query CCDS DB by GeneID:79780See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000680728.1 ENSP00000506715.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680728.1Link to Ensembl Protein Viewer:ENSP00000506715.1Re-query CCDS DB by Nucleotide ID:ENST00000680728Re-query CCDS DB by Protein ID:ENSP00000506715
Original member Current member NCBI NM_001363594.2 NP_001350523.1 Accepted alive Link to Nucleotide Sequence:NM_001363594.2Link to Protein Sequence:NP_001350523.1Re-query CCDS DB by Nucleotide ID:NM_001363594Re-query CCDS DB by Protein ID:NP_001350523Link to BLAST:NP_001350523.1

Chromosomal Locations for CCDS 86243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96353646 96353714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96358993 96359178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96364980 96365150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96371013 96371137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96373375 96373467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96383269 96383473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96383962 96384293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96384363 96384747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGATACATGTTAGAAGACATGAAACAAGGAGAAATTCTAAGAGTCACGTGCCTGAGCAGAAATCTCGAG
TTGATTGGAGGCGAACTAAAAGAAGTAGTATCTCACAATTACTTGATAGTGATGAAGAGCTTGATAGTGA
AGAATTTGATAGTGATGAAGAGCTTGATAGTGATGAAAGTTTTGAAAATGATGAAGAGCTTGATAGTAAC
AAGGGACCTGATTGTAATAAAACACCAGGAAGTGAAAGAGAGCTCAACTTAAGTAAAATTCAAAGTGAAG
GAAATGACAGTAAGTGTCTCATTAACTCTGGCAACGGTTCAACATATGAAGAAGAAACGAACAAAATCAA
ACATAGGAATATTGACTTACAAGATCAGGAAAAACATTTAAGTCAAGAGGATAATGATCTCAACAAACAA
ACTGGACAAATAATAGAGGATGATTTAGAAGAAGAAGACATCAAGCGAGGAAAAAGAAAAAGGCTATCCT
CTGTGATGTGTGACAGTGATGAGAGTGATGACAGCGATATCCTAGTTAGAAAAGTAGGTGTTAAACGTCC
CCGTAGAGTGGTTGAAGATGAAGGTTCTTCAGTGGAAATGGAGCAAAAGACTCCTGAAAAAACATTAGCT
GCACAAAAGCGAGAAAAACTTCAGAAGCTCAAAGAACTCTCAAAACAAAGATCTCGTCAGAGACGCAGTA
GTGGTAGAGATTTTGAGGACTCTGAAAAGGAATCTTGCCCAAGCAGTGATGAAGTTGATGAGGAGGAAGA
AGAGGATAATTATGAATCTGATGAAGATGGAGATGATTATATTATCGATGACTTTGTAGTGCAAGATGAG
GAGGGTGATGAAGAGAATAAAAACCAACAAGGAGAAAAATTGACTACATCACAACTGAAATTAGTAAAAC
AGAATTCTCTTTATTCTTTTAGTGACCACTATACTCATTTTGAAAGAGTTGTGAAGGCTCTTCTGATCAA
CGCTTTAGATGAATCTTTTCTGGGAACATTATATGATGGCACAAGGCAAAAATCATATGCAAAAGATATG
CTAACATCTCTTCATTATTTGGATAACCGCTTTGTTCAGCCTCGTCTAGAGAGCTTGGTATCTAGAAGTC
GTTGGAAAGAGCAATATAAGGAGCGAGTAGAAAATTATTCTAATGTAAGTATTCATTTGAAGAATCCTGA
AAACTGTTCCTGCCAGGCTTGTGGACTGCATCGCTACTGTAAATATTCAGTGCATTTATCAGGAGAGTTG
TATAACACCAGGACCATGCAAATAGATAATTTCATGTCACATGATAAACAGGTGTTCACTGTTGGCAGAA
TTTGTGCCAGCCGTACCAGAATTTATCATAAACTGAAACATTTTAAATTCAAACTATACCAGGAATGTTG
CACCATTGCAATGACAGAAGAAGTTGAAGATGAACAAGTTAAAGAAACAGTGGAAAGAATTTTCAGGCGG
TCAAAAGAAAATGGCTGGATTAAGGAGAAATATGGTCAACTTGAAGAATATCTCAATTTTGCGGATTACT
TTCAAGAAGAGAAGTTTGAGTTGTAA

Translation (521 aa):
MIHVRRHETRRNSKSHVPEQKSRVDWRRTKRSSISQLLDSDEELDSEEFDSDEELDSDESFENDEELDSN
KGPDCNKTPGSERELNLSKIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEKHLSQEDNDLNKQ
TGQIIEDDLEEEDIKRGKRKRLSSVMCDSDESDDSDILVRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLA
AQKREKLQKLKELSKQRSRQRRSSGRDFEDSEKESCPSSDEVDEEEEEDNYESDEDGDDYIIDDFVVQDE
EGDEENKNQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDESFLGTLYDGTRQKSYAKDM
LTSLHYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVSIHLKNPENCSCQACGLHRYCKYSVHLSGEL
YNTRTMQIDNFMSHDKQVFTVGRICASRTRIYHKLKHFKFKLYQECCTIAMTEEVEDEQVKETVERIFRR
SKENGWIKEKYGQLEEYLNFADYFQEEKFEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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