NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85498.1 Public Mus musculus 8 Tnfsf13b 23 108 98 CCDS HistoryNCBI Gene:24099Re-query CCDS DB by CCDS ID:85498.1Re-query CCDS DB by GeneID:24099See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033892.8 ENSMUSP00000033892.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033892.8Link to Ensembl Protein Viewer:ENSMUSP00000033892.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033892Re-query CCDS DB by Protein ID:ENSMUSP00000033892
Original member NCBI NM_001347309.1 NP_001334238.1 Updated not alive Link to Nucleotide Sequence:NM_001347309.1Link to Protein Sequence:NP_001334238.1Re-query CCDS DB by Nucleotide ID:NM_001347309Re-query CCDS DB by Protein ID:NP_001334238
Current member NCBI NM_001347309.2 NP_001334238.1 Accepted alive Link to Nucleotide Sequence:NM_001347309.2Link to Protein Sequence:NP_001334238.1Re-query CCDS DB by Nucleotide ID:NM_001347309Re-query CCDS DB by Protein ID:NP_001334238Link to BLAST:NP_001334238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334238.1 290 Q9WU72-2 290 100% 0 0

Chromosomal Locations for CCDS 85498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 10006843 10007160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10007250 10007334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10014169 10014261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10031310 10031422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10031506 10031656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10035329 10035441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGATGAGTCTGCAAAGACCCTGCCACCACCGTGCCTCTGTTTTTGCTCCGAGAAAGGAGAAGATATGA
AAGTGGGATATGATCCCATCACTCCGCAGAAGGAGGAGGGTGCCTGGTTTGGGATCTGCAGGGATGGAAG
GCTGCTGGCTGCTACCCTCCTGCTGGCCCTGTTGTCCAGCAGTTTCACAGCGATGTCCTTGTACCAGTTG
GCTGCCTTGCAAGCAGACCTGATGAACCTGCGCATGGAGCTGCAGAGCTACCGAGGTTCAGCAACACCAG
CCGCCGCGGGTGCTCCAGAGTTGACCGCTGGAGTCAAACTCCTGACACCGGCAGCTCCTCGACCCCACAA
CTCCAGCCGCGGCCACAGGAACAGACGCGCTTTCCAGGGACCAGAGGAAACAGAACAAGATGTAGACCTC
TCAGCTCCTCCTGCACCATGCCTGCCTGGATGCCGCCATTCTCAACATGATGATAATGGAATGAACCTCA
GAAACAGAACTTACACATTTGTTCCATGGCTTCTCAGCTTTAAAAGAGGAAATGCCTTGGAGGAGAAAGA
GAACAAAATAGTGGTGAGGCAAACAGGCTATTTCTTCATCTACAGCCAGGTTCTATACACGGACCCCATC
TTTGCTATGGGTCATGTCATCCAGAGGAAGAAAGTACACGTCTTTGGGGACGAGCTGAGCCTGGTGACCC
TGTTCCGATGTATTCAGAATATGCCCAAAACACTGCCCAACAATTCCTGCTACTCGGCTGGCATCGCGAG
GCTGGAAGAAGGAGATGAGATTCAGCTTGCAATTCCTCGGGAGAATGCACAGATTTCACGCAACGGAGAC
GACACCTTCTTTGGTGCCCTAAAACTGCTGTAA

Translation (290 aa):
MDESAKTLPPPCLCFCSEKGEDMKVGYDPITPQKEEGAWFGICRDGRLLAATLLLALLSSSFTAMSLYQL
AALQADLMNLRMELQSYRGSATPAAAGAPELTAGVKLLTPAAPRPHNSSRGHRNRRAFQGPEETEQDVDL
SAPPAPCLPGCRHSQHDDNGMNLRNRTYTFVPWLLSFKRGNALEEKENKIVVRQTGYFFIYSQVLYTDPI
FAMGHVIQRKKVHVFGDELSLVTLFRCIQNMPKTLPNNSCYSAGIARLEEGDEIQLAIPRENAQISRNGD
DTFFGALKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH