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Report for CCDS85212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85212.1 Public Mus musculus 7 Clcn4 23 108 98 CCDS HistoryNCBI Gene:12727Re-query CCDS DB by CCDS ID:85212.1Re-query CCDS DB by GeneID:12727See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210594.1 ENSMUSP00000147562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210594.1Link to Ensembl Protein Viewer:ENSMUSP00000147562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210594Re-query CCDS DB by Protein ID:ENSMUSP00000147562
Original member NCBI NM_001302386.1 NP_001289315.1 Updated not alive Link to Nucleotide Sequence:NM_001302386.1Link to Protein Sequence:NP_001289315.1Re-query CCDS DB by Nucleotide ID:NM_001302386Re-query CCDS DB by Protein ID:NP_001289315
Current member NCBI NM_001302386.2 NP_001289315.1 Accepted alive Link to Nucleotide Sequence:NM_001302386.2Link to Protein Sequence:NP_001289315.1Re-query CCDS DB by Nucleotide ID:NM_001302386Re-query CCDS DB by Protein ID:NP_001289315Link to BLAST:NP_001289315.1

Chromosomal Locations for CCDS 85212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7284184 7284274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7287646 7287862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7288875 7289273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7290399 7290585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7291411 7291956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7293038 7293118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7293915 7294121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7294733 7294855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7294996 7295183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7295970 7295994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGCTACTCATTGGGCTGCTGGCAGGTACCTTGGCTGGAGTCATCGATCTCGCTGTGGATTGGATGACGG
ACCTCAAGGAGGGGGTCTGTCTGTCCGCATTCTGGTACAGCCATGAACAGTGCTGTTGGACCTCCAACGA
GACCACTTTTGAGGACAGGGACAAGTGTCCCCTGTGGCAGAAGTGGTCAGAGCTTCTTCTGAGCCAGTCA
GAGGGCGCCAGCGCTTACATTCTGAATTACTTAATGTACATTCTATGGGCGTTGCTGTTTGCATTTCTGG
CTGTCTCCCTGGTACGTGTGTTCGCACCGTATGCCTGTGGCTCTGGCATACCCGAGATAAAGACTATTTT
GAGTGGCTTTATCATCAGGGGATACTTGGGGAAATGGACTCTTCTAATCAAGACTGTCACCCTCGTGCTC
GTCGTATCCTCTGGCCTGAGCCTTGGCAAAGAGGGCCCACTGGTGCATGTGGCATGTTGCTGTGGCAACT
TCTTCAGCAGCCTTTTCTCCAAGTATAGCAAGAATGAAGGCAAGAGGCGTGAGGTGCTTTCAGCTGCAGC
TGCTGCTGGTGTCTCTGTGGCCTTTGGTGCTCCGATAGGAGGTGTGCTCTTCAGTCTAGAGGAGGTCAGT
TACTACTTTCCCTTGAAAACCTTGTGGAGGTCATTCTTTGCAGCCCTGGTGGCTGCCTTCACACTGCGCT
CCATCAACCCCTTTGGAAATAGCCGCCTGGTTCTCTTTTATGTGGAGTATCATACACCCTGGTACATGGC
TGAACTCTTCCCTTTCATCCTGCTTGGAGTCTTTGGGGGTTTATGGGGAACCCTCTTCACACGCTGCAAC
ATTGCTTGGTGCAGGAGGCGTAAGACCACCAGGCTGGGCAGGTACCCAGTGTTGGAGGTTATTGCGGTGA
CAGCCGTCACCGCCATCGTGGCCTACCCCAATCCCTACACTCGCCAGAGCACCAGTGAGCTCATCTCTGA
GCTCTTCAACGATTGTGGGGCTCTCGAGTCTTCTCAGCTCTGTGACTACATCAACGACCCCAACATGACT
CGGCCTGTGGATGACATTCCGGACCGGCCGGCTGGGGTTGGAGTTTACACAGCCATGTGGCAGCTGGCCT
TGGCACTGATCTTCAAAATAGTCATTACTATATTTACCTTTGGCATGAAGATTCCCTCAGGTCTCTTCAT
CCCCAGTATGGCTGTCGGAGCCATGGCAGGCCGGATGGTGGGAATCGGTGTGGAGCAGCTGGCCTACCAT
CACCATGACTGGATCATCTTCAGGAACTGGTGCAGGCCTGGAGCGGACTGTGTCACACCAGGGCTTTATG
CGATGGTGGGAGCTGCAGCCTGTCTAGGTGGGGTGACTAGGATGACAGTGTCTCTAGTGGTCATTATGTT
TGAACTGACTGGAGGTCTGGAGTATATTGTACCCCTGATGGCAGCTGCTGTCACCAGCAAGTGGGTGGCT
GATGCCTTTGGGAAAGAAGGGATTTATGAAGCCCACATCCATCTGAATGGGTACCCATTTCTTGATGTGA
AGGATGAGTTCACCCACCGTACGCTGGCCACTGATGTGATGCGGCCCCGGAGGGGAGAACCGCCATTATC
GGTACTAACCCAGGACAGCATGACTGTGGAGGACGTGGAGACTCTCATCAAGGAGACAGACTACAACGGC
TTTCCTGTGCTCGTCTCCAGAGACTCGGAGCGTCTCATCGGGTTTGCCCAGAGGCGGGAGCTAATCTTGG
CTATAAAAAATGCCAGGCAGAGGCAAGAGGGCATTGTGAGCAATTCCATCATGTACTTCACAGAGGAGCC
TCCTGAGCTGCCTGCCAACAGCCCACATCCACTGAAGCTGAGGCGCATTTTGAACCTGAGCCCTTTCACG
GTCACAGATCACACCCCCATGGAGACGGTGGTGGACATTTTCCGGAAACTGGGGCTCCGACAATGCCTGG
TGACACGGAGTGGGAGACTTCTTGGGATCATCACAAAAAAGGATGTTCTGAGACACATGGCCCAGATGGC
AAACCAGGACCCTGAATCCATCATGTTTAATTAG

Translation (687 aa):
MLLIGLLAGTLAGVIDLAVDWMTDLKEGVCLSAFWYSHEQCCWTSNETTFEDRDKCPLWQKWSELLLSQS
EGASAYILNYLMYILWALLFAFLAVSLVRVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLLIKTVTLVL
VVSSGLSLGKEGPLVHVACCCGNFFSSLFSKYSKNEGKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVS
YYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEYHTPWYMAELFPFILLGVFGGLWGTLFTRCN
IAWCRRRKTTRLGRYPVLEVIAVTAVTAIVAYPNPYTRQSTSELISELFNDCGALESSQLCDYINDPNMT
RPVDDIPDRPAGVGVYTAMWQLALALIFKIVITIFTFGMKIPSGLFIPSMAVGAMAGRMVGIGVEQLAYH
HHDWIIFRNWCRPGADCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVA
DAFGKEGIYEAHIHLNGYPFLDVKDEFTHRTLATDVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNG
FPVLVSRDSERLIGFAQRRELILAIKNARQRQEGIVSNSIMYFTEEPPELPANSPHPLKLRRILNLSPFT
VTDHTPMETVVDIFRKLGLRQCLVTRSGRLLGIITKKDVLRHMAQMANQDPESIMFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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