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Report for CCDS85034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85034.1 Public Mus musculus 6 Zyx 23 108 98 CCDS HistoryNCBI Gene:22793Re-query CCDS DB by CCDS ID:85034.1Re-query CCDS DB by GeneID:22793See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070635.12 ENSMUSP00000070427.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070635.12Link to Ensembl Protein Viewer:ENSMUSP00000070427.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070635Re-query CCDS DB by Protein ID:ENSMUSP00000070427
Original member Current member EBI ENSMUST00000203401.2 ENSMUSP00000145236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203401.2Link to Ensembl Protein Viewer:ENSMUSP00000145236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203401Re-query CCDS DB by Protein ID:ENSMUSP00000145236
Original member NCBI NM_001289618.1 NP_001276547.1 Updated not alive Link to Nucleotide Sequence:NM_001289618.1Link to Protein Sequence:NP_001276547.1Re-query CCDS DB by Nucleotide ID:NM_001289618Re-query CCDS DB by Protein ID:NP_001276547
Current member NCBI NM_001289618.2 NP_001276547.1 Accepted alive Link to Nucleotide Sequence:NM_001289618.2Link to Protein Sequence:NP_001276547.1Re-query CCDS DB by Nucleotide ID:NM_001289618Re-query CCDS DB by Protein ID:NP_001276547Link to BLAST:NP_001276547.1
Original member NCBI NM_001289619.1 NP_001276548.1 Updated not alive Link to Nucleotide Sequence:NM_001289619.1Link to Protein Sequence:NP_001276548.1Re-query CCDS DB by Nucleotide ID:NM_001289619Re-query CCDS DB by Protein ID:NP_001276548
Current member NCBI NM_001289619.2 NP_001276548.1 Accepted alive Link to Nucleotide Sequence:NM_001289619.2Link to Protein Sequence:NP_001276548.1Re-query CCDS DB by Nucleotide ID:NM_001289619Re-query CCDS DB by Protein ID:NP_001276548Link to BLAST:NP_001276548.1

Chromosomal Locations for CCDS 85034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42350269 42350476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42350946 42351148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42351475 42351969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42355917 42356037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42356162 42356331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42356432 42356610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42357313 42357433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42357852 42357956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCGGCCCCCCGCCCGCCTCCCGCGATCTCCGTCTCCGTCTCGGCCCCCGCGTTTTACGCCCCGCAGA
AGAAGTTCGCCCCGGTTGTGGCCCCAAAGCCCAAAGTGAATCCTTTCCGGCCTGGGGACAGCGAGCCTCC
TGTAGCAGCCGGGGCCCAAAGAGCGCAGATGGGTCGGGTGGGCGAGATCCCACCACCACCCCCGGAAGAC
TTTCCTTTGCCCCCTCCTCCCCTTATTGGGGAGGGCGACGACTCAGAGGGTGCCCTGGGAGGTGCCTTCC
CACCTCCACCTCCCCCGATGATCGAGGAACCATTCCCCCCTGCTCCTCTGGAGGAGGACATCTTCCCCTC
CCCTCCACCTCCACTGGAGGAGGAGGGAGGGCCTGAGGCCCCTACCCAGCTCCCACCGCAGGTATCATCC
GGATATGTACCCCCACCAGTTGCCACTCCATTTGTTCCCAAGCCTAGTACCAAACCTGCCCCTGGGGGCA
CAGCACCCTTGCCTCCTTGGAAGACCCCTTCTAGCTCCCAGCCACCACCTCAGCCGCAGGCCAAGCCTCA
GGTCCAGCTCCATGTCCAGCCTCAGGCCAAGCCCCATGTCCAACCCCAGCCTGTGTCTTCTGCTAATACA
CAGCCCCGGGGTCCCCTTTCTCAGGCACCAACTCCAGCACCTAAGTTTGCTCCAGTGGCTCCTAAATTTA
CTCCCGTGGTTTCCAAGTTCAGCCCTGGTGCTCCAAGTGGACCTGGGCCACAGCCCAATCAAAAAATGGT
GCCTCCGGATGCTCCTTCTTCTGTGAGCACAGGCTCCCCTCAGCCCCCTAGCTTCACCTATGCTCAGCAG
AAGGAGAAGCCCCTAGTTCAAGAGAAGCAGCACCCACAGCCTCCACCAGCTCAAAACCAAAACCAGGTAC
GCTCTCCTGGAGGCCCAGGCCCCTTGACCCTGAAGGAGGTAGAGGAGTTGGAGCAGCTGACCCAGCAGCT
GATGCAGGACATGGAACACCCTCAGAGGCAGAGCGTGGCAGTGAATGAGTCCTGTGGCAAATGCAATCAG
CCACTGGCCCGTGCACAGCCTGCGGTTCGTGCACTGGGACAACTGTTCCACATCACCTGCTTCACTTGCC
ATCAGTGTCAGCAGCAGCTGCAGGGACAGCAGTTCTATAGCCTGGAGGGAGCACCATATTGTGAGGGCTG
CTACACCGACACTTTGGAGAAGTGCAACACCTGTGGGCAGCCCATCACTGACCGCATGCTGAGGGCCACT
GGCAAAGCCTACCACCCACAGTGCTTCACCTGTGTGGTCTGCGCCTGTCCCCTGGAGGGCACCTCCTTCA
TTGTGGACCAGGCCAATCAGCCCCACTGTGTCCCTGACTATCACAAGCAATACGCTCCAAGGTGCTCCGT
CTGCTCGGAGCCAATCATGCCTGAGCCTGGCCGAGACGAGACTGTGCGAGTAGTGGCGCTGGATAAGAAC
TTTCATATGAAGTGTTACAAGTGTGAGGACTGTGGGAAACCTCTGTCCATTGAGGCAGATGACAACGGCT
GTTTCCCTCTGGATGGCCACGTCCTTTGTCGGAAGTGCCACTCCGCTAGAGCCCAGACCTGA

Translation (533 aa):
MAAPRPPPAISVSVSAPAFYAPQKKFAPVVAPKPKVNPFRPGDSEPPVAAGAQRAQMGRVGEIPPPPPED
FPLPPPPLIGEGDDSEGALGGAFPPPPPPMIEEPFPPAPLEEDIFPSPPPPLEEEGGPEAPTQLPPQVSS
GYVPPPVATPFVPKPSTKPAPGGTAPLPPWKTPSSSQPPPQPQAKPQVQLHVQPQAKPHVQPQPVSSANT
QPRGPLSQAPTPAPKFAPVAPKFTPVVSKFSPGAPSGPGPQPNQKMVPPDAPSSVSTGSPQPPSFTYAQQ
KEKPLVQEKQHPQPPPAQNQNQVRSPGGPGPLTLKEVEELEQLTQQLMQDMEHPQRQSVAVNESCGKCNQ
PLARAQPAVRALGQLFHITCFTCHQCQQQLQGQQFYSLEGAPYCEGCYTDTLEKCNTCGQPITDRMLRAT
GKAYHPQCFTCVVCACPLEGTSFIVDQANQPHCVPDYHKQYAPRCSVCSEPIMPEPGRDETVRVVALDKN
FHMKCYKCEDCGKPLSIEADDNGCFPLDGHVLCRKCHSARAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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