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Report for CCDS84439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84439.1 Public Mus musculus 19 Hps1 23 108 98 CCDS HistoryNCBI Gene:192236Re-query CCDS DB by CCDS ID:84439.1Re-query CCDS DB by GeneID:192236See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160455.7 ENSMUSP00000125662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160455.7Link to Ensembl Protein Viewer:ENSMUSP00000125662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160455Re-query CCDS DB by Protein ID:ENSMUSP00000125662
Original member Current member NCBI NM_001346703.2 NP_001333632.1 Accepted alive Link to Nucleotide Sequence:NM_001346703.2Link to Protein Sequence:NP_001333632.1Re-query CCDS DB by Nucleotide ID:NM_001346703Re-query CCDS DB by Protein ID:NP_001333632Link to BLAST:NP_001333632.1

Chromosomal Locations for CCDS 84439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42755634 42755796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42756258 42756340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42757793 42757906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42759706 42759850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42760364 42760429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42760510 42760644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42761012 42761073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42762096 42762275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42762393 42762560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42763795 42763844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42765913 42765982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42766130 42766216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42766686 42766833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42767118 42767278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42769606 42769714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42770754 42770896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42771117 42771254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42778122 42778238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGAAGTGCGTGTTGGTGGCCACCGAGGGCGCAGAGGTCCTCTTCTACTGGACAGATGAGGAGTTTGCTG
AGAGCCTCCGGCTGAAGCTCCAGCAGTCAGAGGATGAGGAAGAGGAGCTCCCTGTGCTGGAGGACCAGCT
CAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACC
TGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTGTTTGGAGAGTACCTGTTCGTCGCCA
TCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGA
GGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGAGCTTCGTCCACCCGACCTGGAA
GAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGC
AGAGCTTTGCTGTGGAGGCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCT
AGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTC
CTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGGCCATGGTGCGAGCACCCTGCGCCCCGCAGACC
TCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGA
GGAGGATAGCGACAGCCCTCAGGTCCCGGAGCACAAGGGGAACAGGAGGAGACCCAAGAGCAGCCAAAAC
ATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACAGACACAG
ACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCT
CGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAGATGGCTGAGGACACCCCCGAGGGGCTG
GCGTCTCACTCCCCAGAACTTCCCAGCCCCAGAAGGATCTTCCTGGATGCCAACATAAAAGAAAACTACT
GTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAA
GAGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAG
CTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGA
TGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAGAACACCTGGCTGGAGTTTAAGAGCAAAGC
CTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGAGCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTG
TGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACC
TGCAGGACCGAGCCCAGAAACTCATGAAGGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAG
CCGGAGAAATGTCACCATGGTGTCCTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGAC
CGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGG
GGCCCCTGGCTGCCTTTGTCAAAGCCAAGGTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAA
GGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGAC
ATGGGATACAAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGG
GAGGTGACTACTACAGGAAACTTCTGCGCTACTACAGCAAGAGCCACCCCTCGGAGCCCGTCAGGTGCTA
TGAGCTGCTCACGCTGCATCTGTCCGTCATCCCCACGGACCTGCTGGTGCAGCAGGCCAGCCAGCTGGCC
CGGCGCCTGGGGGAGGCCTCCCGGGTGACCCTGCCCTAG

Translation (712 aa):
MKCVLVATEGAEVLFYWTDEEFAESLRLKLQQSEDEEEELPVLEDQLSTLLAPVIISSMTMMEKLSDTYT
CFSTENDNHLYVLHLFGEYLFVAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDGQLIRKELRPPDLE
ERARVWKHFQRLLGTYSYLRDREQSFAVEAVERLIHPQLCEQSIETLERHVVQAINASPERGGEEVLHAF
LLVHCKLLAFYSGHGASTLRPADLLALILLVQDLQPSPGTTEEEEEEEDSDSPQVPEHKGNRRRPKSSQN
IPVQQARSQSTSVPTRSSRETDTDSISLPEEYFTPAPSPGDQSSGSLVWLDGGTPPSDALQMAEDTPEGL
ASHSPELPSPRRIFLDANIKENYCPLVPHTMYCLPLWPGINMVLLTKSPSTPLALILYQLLDGFSLLEKK
LKEGQEAGSALRSQPFVADLRQKMDKFIKNRVGQEIQNTWLEFKSKAFSRSEPGSSWELLQVCGKLKRQL
CVIYRLSFLVTAPSRGGPHLPQHLQDRAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVD
RTTGQMVAPSLSPNEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFEND
MGYKLQMIEVPVLSDDSVPIGVLGGDYYRKLLRYYSKSHPSEPVRCYELLTLHLSVIPTDLLVQQASQLA
RRLGEASRVTLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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