NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82666.1 Public Homo sapiens 21 ITSN1 24 110 108 CCDS HistoryNCBI Gene:6453Re-query CCDS DB by CCDS ID:82666.1Re-query CCDS DB by GeneID:6453See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399353.5 ENSP00000382290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399353.5Link to Ensembl Protein Viewer:ENSP00000382290.1Re-query CCDS DB by Nucleotide ID:ENST00000399353Re-query CCDS DB by Protein ID:ENSP00000382290
Original member Current member NCBI NM_001331012.2 NP_001317941.1 Accepted alive Link to Nucleotide Sequence:NM_001331012.2Link to Protein Sequence:NP_001317941.1Re-query CCDS DB by Nucleotide ID:NM_001331012Re-query CCDS DB by Protein ID:NP_001317941Link to BLAST:NP_001317941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317941.1 1178 Q15811-10 1178 100% 0 0

Chromosomal Locations for CCDS 82666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 33718829 33718856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33721178 33721270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33722588 33722651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33735044 33735204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33750254 33750322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33751810 33751906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33755297 33755397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33761923 33761986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33765875 33766012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33767713 33767828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33772061 33772323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33774729 33774878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33774968 33775108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33781461 33781548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33781994 33782133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33794341 33794468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33797379 33797608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33799808 33799929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33810975 33811222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33813913 33814072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33818267 33818472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33819241 33819323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33823487 33823653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33826818 33826863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33829624 33829745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33834307 33834424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33836441 33836632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33836987 33836988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3537 nt):
ATGGCTCAGTTTCCAACACCTTTTGGTGGCAGCCTGGATATCTGGGCCATAACTGTAGAGGAAAGAGCGA
AG
CATGATCAGCAGTTCCATAGTTTAAAGCCAATATCTGGATTCATTACTGGTGATCAAGCTAGAAACTT
T
TTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATGGGCACTAGCTGACATGAATAATGAT
GGA
AGAATGGATCAAGTGGAGTTTTCCATAGCTATGAAACTTATCAAACTGAAGCTACAAGGATATCAGC
TA
CCCTCTGCACTTCCCCCTGTCATGAAACAGCAACCAGTTGCTATTTCTAGCGCACCAGCATTTGCAGC
T
GTGCCCCCCCTGGCTAACGGGGCTCCCCCTGTTATACAACCTCTGCCTGCATTTGCTCATCCTGCAGCC
ACA
TTGCCAAAGAGTTCTTCCTTTAGTAGATCTGGTCCAGGGTCACAACTAAACACTAAATTACAAAAGG
CA
CAGTCATTTGATGTGGCCAGTGTCCCACCAGTGGCAGAGTGGGCTGTTCCTCAGTCATCAAGACTGAA
A
TACAGGCAATTATTCAATAGTCATGACAAAACTATGAGTGGACACTTAACAGGTCCCCAAGCAAGAACT
ATT
CTTATGCAGTCAAGTTTACCACAGGCTCAGCTGGCTTCAATATGGAATCTTTCTGACATTGATCAAG
AT
GGAAAACTTACAGCAGAGGAATTTATCCTGGCAATGCACCTCATTGATGTAGCTATGTCTGGCCAACC
A
CTGCCACCTGTCCTGCCTCCAGAATACATTCCACCTTCTTTTAGAAGAGTTCGATCTGGCAGTGGTATA
TCT
GTCATAAGCTCAACATCTGTAGATCAGAGGCTACCAGAGGAACCAGTTTTAGAAGATGAACAACAAC
AA
TTAGAAAAGAAATTACCTGTAACGTTTGAAGATAAGAAGCGGGAGAACTTTGAACGTGGCAACCTGGA
A
CTGGAGAAACGAAGGCAAGCTCTCCTGGAACAGCAGCGCAAGGAGCAGGAGCGCCTGGCCCAGCTGGAG
CGG
GCGGAGCAGGAGAGGAAGGAGCGTGAGCGCCAGGAGCAAGAGCGCAAAAGACAACTGGAACTGGAGA
AG
CAACTGGAAAAGCAGCGGGAGCTAGAACGGCAGAGAGAGGAGGAGAGGAGGAAAGAAATTGAGAGGCG
A
GAGGCTGCAAAACGGGAACTTGAAAGGCAACGACAACTTGAGTGGGAACGGAATCGAAGGCAAGAACTA
CTA
AATCAAAGAAACAAAGAACAAGAGGACATAGTTGTACTGAAAGCAAAGAAAAAGACTTTGGAATTTG
AA
TTAGAAGCTCTAAATGATAAAAAGCATCAACTAGAAGGGAAACTTCAAGATATCAGATGTCGATTGAC
C
ACCCAAAGGCAAGAAATTGAGAGCACAAACAAATCTAGAGAGTTGAGAATTGCCGAAATCACCCATCTA
CAG
CAACAATTACAGGAATCTCAGCAAATGCTTGGAAGACTTATTCCAGAAAAACAGATACTCAATGACC
AA
TTAAAACAAGTTCAGCAGAACAGTTTGCACAGAGATTCACTTGTTACACTTAAAAGAGCCTTAGAAGC
A
AAAGAACTAGCTCGGCAGCACCTACGAGACCAACTGGATGAAGTGGAGAAAGAAACTAGATCAAAACTA
CAG
GAGATTGATATTTTCAATAATCAGCTGAAGGAACTAAGAGAAATACACAATAAGCAACAACTCCAGA
AG
CAAAAGTCCATGGAGGCTGAACGACTGAAACAGAAAGAACAAGAACGAAAGATCATAGAATTAGAAAA
A
CAAAAAGAAGAAGCCCAAAGACGAGCTCAGGAAAGGGACAAGCAGTGGCTGGAGCATGTGCAGCAGGAG
GAC
GAGCATCAGAGACCAAGAAAACTCCACGAAGAGGAAAAACTGAAAAGGGAGGAGAGTGTCAAAAAGA
AG
GATGGCGAGGAAAAAGGCAAACAGGAAGCACAAGACAAGCTGGGTCGGCTTTTCCATCAACACCAAGA
A
CCAGCTAAGCCAGCTGTCCAGGCACCCTGGTCCACTGCAGAAAAAGGTCCACTTACCATTTCTGCACAG
GAA
AATGTAAAAGTGGTGTATTACCGGGCACTGTACCCCTTTGAATCCAGAAGCCATGATGAAATCACTA
TC
CAGCCAGGAGACATAGTCATGGTGGATGAAAGCCAAACTGGAGAACCCGGCTGGCTTGGAGGAGAATT
A
AAAGGAAAGACAGGGTGGTTCCCTGCAAACTATGCAGAGAAAATCCCAGAAAATGAGGTTCCCGCTCCA
GTG
AAACCAGTGACTGATTCAACATCTGCCCCTGCCCCCAAACTGGCCTTGCGTGAGACCCCCGCCCCTT
TG
GCAGTAACCTCTTCAGAGCCCTCCACGACCCCTAATAACTGGGCCGACTTCAGCTCCACGTGGCCCAC
C
AGCACGAATGAGAAACCAGAAACGGATAACTGGGATGCATGGGCAGCCCAGCCCTCTCTCACCGTTCCA
AGT
GCCGGCCAGTTAAGGCAGAGGTCCGCCTTTACTCCAGCCACGGCCACTGGCTCCTCCCCGTCTCCTG
TG
CTAGGCCAGGGTGAAAAGGTGGAGGGGCTACAAGCTCAAGCCCTATATCCTTGGAGAGCCAAAAAAGA
C
AACCACTTAAATTTTAACAAAAATGATGTCATCACCGTCCTGGAACAGCAAGACATGTGGTGGTTTGGA
GAA
GTTCAAGGTCAGAAGGGTTGGTTCCCCAAGTCTTACGTGAAACTCATTTCAGGGCCCATAAGGAAGT
CT
ACAAGCATGGATTCTGGTTCTTCAGAGAGTCCTGCTAGTCTAAAGCGAGTAGCCTCTCCAGCAGCCAA
G
CCGGTCGTTTCGGGAGAAGAATTTATTGCCATGTACACTTACGAGAGTTCTGAGCAAGGAGATTTAACC
TTT
CAGCAAGGGGATGTGATTTTGGTTACCAAGAAAGATGGTGACTGGTGGACAGGAACAGTGGGCGACA
AG
GCCGGAGTCTTCCCTTCTAACTATGTGAGGCTTAAAGATTCAGAGGGCTCTGGAACTGCTGGGAAAAC
A
GGGAGTTTAGGAAAAAAACCTGAAATTGCCCAGGTTATTGCCTCATACACCGCCACCGGCCCCGAGCAG
CTC
ACTCTCGCCCCTGGTCAGCTGATTTTGATCCGAAAAAAGAACCCAGGTGGATGGTGGGAAGGAGAGC
TG
CAAGCACGTGGGAAAAAGCGCCAGATAGGCTGGTTCCCAGCTAATTATGTAAAGCTTCTAAGCCCTGG
G
ACGAGCAAAATCACTCCAACAGAGCCACCTAAGTCAACAGCATTAGCGGCAGTGTGCCAGGTGATTGGG
ATG
TACGACTACACCGCGCAGAATGACGATGAGCTGGCCTTCAACAAGGGCCAGATCATCAACGTCCTCA
AC
AAGGAGGACCCTGACTGGTGGAAAGGAGAAGTCAATGGACAAGTGGGGCTCTTCCCATCCAATTATGT
G
AAGCTGACCACAGACATGGACCCAAGCCAGCAATGA


Translation (1178 aa):
MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNND
G
RMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPAF
AAVPPLANGAPPVIQPLPAFAHPAA
T
LPKSSSFSRSGPGSQLNTKLQKAQSFDVA
SVPPVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQART
I
LMQSSLPQAQLASI
WNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFRRVRSGSGI
S
VISSTSVDQRLPEEPVLEDEQQQLEKKLP
VTFEDKKRENFERGNLELEKRRQALLEQQRKEQERLAQLE
R
AEQERKERERQEQERKRQLELEKQLEKQRELERQREEERRKEIERRE
AAKRELERQRQLEWERNRRQEL
L
NQRNKEQEDIVVLKAKKKTLEFELEAL
NDKKHQLEGKLQDIRCRLTTQRQEIESTNKSRELRIAEITHL
Q
QQLQ
ESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKL
Q
EIDIFNNQLK
ELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQKEEAQRRAQERDKQWLEHVQQE
D
EHQRPRKLHEEEKLKREESVKKKDGEEKGKQEAQDKLGRLFHQHQEPAKPAVQAPWSTA
EKGPLTISAQ
E
NVKVVYYRALYPFESRSHDEITIQPGDIVM
VDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP
V
KPVTDSTSAPAPKLALRETPAPLAVTSSEPSTTPNNWADFSS
TWPTSTNEKPETDNWDAWAAQPSLTVP
S
AGQLRQRSAFTPATATGSSPSPVLGQ
GEKVEGLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFG
E
VQGQKGWFPKSYVKLISGPIRKST
SMDSGSSESPASLKRVASPAAKPVVSGEEFIAMYTYESSEQGDLT
F
QQGDVILVTKKDGDWWTGTVGDKAGVFPSNYVRLKDSE
GSGTAGKTGSLGKKPEIAQVIASYTATGPEQ
L
TLAPGQLILIRKKNPGGWWEGELQ
ARGKKRQIGWFPANYVKLLSPGTSKITPTEPPKSTALAAVCQVIG
M
YDYTAQNDDELAFNKGQIINVLNKEDPDWWKGEVNGQVGLFPSNYVKLTTDMDPSQQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser