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Report for CCDS80626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80626.1 Public Mus musculus 6 Smim10l1 23 108 98 CCDS HistoryNCBI Gene:381820Re-query CCDS DB by CCDS ID:80626.1Re-query CCDS DB by GeneID:381820See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191462.1 ENSMUSP00000139452.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191462.1Link to Ensembl Protein Viewer:ENSMUSP00000139452.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191462Re-query CCDS DB by Protein ID:ENSMUSP00000139452
Original member Current member NCBI NM_001271583.1 NP_001258512.1 Accepted alive Link to Nucleotide Sequence:NM_001271583.1Link to Protein Sequence:NP_001258512.1Re-query CCDS DB by Nucleotide ID:NM_001271583Re-query CCDS DB by Protein ID:NP_001258512Link to BLAST:NP_001258512.1

Chromosomal Locations for CCDS 80626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 133105414 133105605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133107864 133107941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGGGTCCCGCCGACGCCCCGTCCGCCCTAGCGCTCAGGGCAGTGGGCCCTGCGGCCGCCACCCCGTATG
GTGTCTTCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCTTCGAGCTGGCCTGGCAGCTGCGCATGAA
CTTCCCGTACTTCTACATCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGGGTTTCTCTGGAAATTGC
TGTGTATTCCAGGCTAGCTCAAGACTTATGATCTCTCTGCCATCACCTTTTGATTACTAG

Translation (89 aa):
MGPADAPSALALRAVGPAAATPYGVFCKGLSRTLLAFFELAWQLRMNFPYFYIAGSVILNIRLQGFSGNC
CVFQASSRLMISLPSPFDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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