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Report for CCDS80033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80033.1 Public Mus musculus 3 Rap1gds1 23 108 98 CCDS HistoryNCBI Gene:229877Re-query CCDS DB by CCDS ID:80033.1Re-query CCDS DB by GeneID:229877See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196280.4 ENSMUSP00000143181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196280.4Link to Ensembl Protein Viewer:ENSMUSP00000143181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196280Re-query CCDS DB by Protein ID:ENSMUSP00000143181
Original member NCBI NM_001286759.1 NP_001273688.1 Updated not alive Link to Nucleotide Sequence:NM_001286759.1Link to Protein Sequence:NP_001273688.1Re-query CCDS DB by Nucleotide ID:NM_001286759Re-query CCDS DB by Protein ID:NP_001273688
Current member NCBI NM_001286759.2 NP_001273688.1 Accepted alive Link to Nucleotide Sequence:NM_001286759.2Link to Protein Sequence:NP_001273688.1Re-query CCDS DB by Nucleotide ID:NM_001286759Re-query CCDS DB by Protein ID:NP_001273688Link to BLAST:NP_001273688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273688.1 606 E9Q912-2 606 100% 0 0

Chromosomal Locations for CCDS 80033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138927585 138927712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138941730 138941858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138945663 138945789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138955322 138955458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138956194 138956319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138957410 138957544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138958554 138958685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138959036 138959179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138963825 138963950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138965868 138965996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138983722 138983868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139015546 139015671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139021813 139021935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139050481 139050588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139075036 139075039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGATAACCTCAGTGACACTTTAAAGAAGCTGAAGATAACAGCTGCTGACAGGACAGAGGGCAGTCTGG
AAGGATGCTTGGATTGTCTGCTTCAAGCCTTGGCTCAGAATAATGCAGAAACAAGTGAAAAAATACAAGG
AAGTGGAATTCTTCAGTTGTTTGCAAATCTGTTGACGCCACAGGCCTCCTGCACAGCCAAAGTAGCCGAC
ATCATAGCAGAAGTAGCCAAAAATGAATTTATGCGAATCCCATGTGTAGATGCTGGATTGATTTCACCAC
TGGTACAGCTGTTAAATAGCAAAGACCAGGAAGTGCTGCTTCAAACGGGCAGGGCATTAGGAAACATATG
CTACGATAGCCATGAGGGCAGAAGTGCAGTTGACCAAGCAGGTGGTGCACAGATTGTAATTGACCATTTA
AGGTCGCTGTGCGGTAGGACAGATCCCGCCAGTGAGAAGCTCATGACTGTCTTTTGTGGCATGCTGATGA
ACTATAGCAATGAGAATGATTCCCTTCAGGCCCAGCTTATTAGCATGGGTGTTATCCCGACCTTAGTGAA
GCTACTGGGCATTCACTGCCACAATGCAGCACTCACCGAGATGTGTCTCGTTGCGTTCGGGAATTTAGCA
GAACTTGAGTCAAGTAAAGAACAGTTTGCTAGCACAAACATTGCTGAAGAGCTGGTAAAACTATTCAAGA
AACAAATAGAACACGATAAAAGAGAGATGATTTTTGAAGTTCTAGCGCCATTGGCAGAGAATGATGCTAT
TAAGCTGCAGCTGGTTGAAGCAGGTTTGGTAGAGTGTCTCCTAGAGATCGTCCAACAGAAGGTGGATAGC
AACAAAGAGGACGACGTTGCCGAGCTTAAAACTGCTTCTGACCTCATGGTTTTATTACTGCTTGGAGATG
AGTCCATGCAGAAACTTTTTGAAGGAGGAAAAGGCAGTGTGTTCCAAAGGGTGCTCTCCTGGATCCCATC
GAATAACCACCAGCTGCAGCTGGCTGGGGCATTAGCCATTGCAAATTTTGCCAGGAACGATGGAAATTGT
ATTCATATGGTAGACAATGGGATTGTAGAAAAACTCATGGATTTGCTGGACAGACACGTAGAAGACGGGA
ACGTGACGGTGCAGCACGCCGCACTAAGTGCCCTCAGGAATCTAGCCATCCCAGTTGTAAATAAAGCAAA
GATGTTATCAGCTGGTGTCACGGAGACGGTTTTGAAATTCCTTAAATCTGAAATGCCCCCAGTTCAGTTC
AAACTCCTGGGAACGCTAAGAATGTTAATAGATGCACAAGAAGCTGCTGAGCAACTGGGAAAGAATGCTA
AACTGGTAGAGCGTTTGGTTGAATGGTGTGAAGCCAAAGATCATGCCGGCGTGATGGGCGAATCAAACAG
ACTGCTCTCTGCCCTCATCCGACACAGTAAATCAAAAGATGTAATTAAAACCATTGTACAGAGTGGTGGC
ATCAAGCACCTGGTTACCATGGCAACTAGTGAACATGTAATCATGCAGAATGAAGCTCTTGTCGCCCTGG
CACTGATAGCAGCCTTGGAACTGGGTCCCGCTGAGAAGGATCTCGCAAGTGCTCAGCTTGTTCAGATCTT
ACACCGACTGCTAGCAGATGAGAGAAGTGCCCCGGAGATCAAGTACAATTCCATGGTCCTGATCTGCGCT
CTCATGGGATCCGAATCTCTATACAAGGAAGTACAGGATTTGGCCTTTCTAGATGTTGTCTCCAAACTTC
GAAGTCATGAGAACAAAAGTGTTGCCCAACAGGCCTCGCTTACAGAGCAGAGACTTACAGTGGAAAGCTG
A

Translation (606 aa):
MDNLSDTLKKLKITAADRTEGSLEGCLDCLLQALAQNNAETSEKIQGSGILQLFANLLTPQASCTAKVAD
IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHL
RSLCGRTDPASEKLMTVFCGMLMNYSNENDSLQAQLISMGVIPTLVKLLGIHCHNAALTEMCLVAFGNLA
ELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAENDAIKLQLVEAGLVECLLEIVQQKVDS
NKEDDVAELKTASDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANFARNDGNC
IHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSALRNLAIPVVNKAKMLSAGVTETVLKFLKSEMPPVQF
KLLGTLRMLIDAQEAAEQLGKNAKLVERLVEWCEAKDHAGVMGESNRLLSALIRHSKSKDVIKTIVQSGG
IKHLVTMATSEHVIMQNEALVALALIAALELGPAEKDLASAQLVQILHRLLADERSAPEIKYNSMVLICA
LMGSESLYKEVQDLAFLDVVSKLRSHENKSVAQQASLTEQRLTVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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