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Report for CCDS80021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80021.1 Reviewed, update pending Mus musculus 3 Mcub 23 108 98 CCDS HistoryNCBI Gene:66815Re-query CCDS DB by CCDS ID:80021.1Re-query CCDS DB by GeneID:66815See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 80021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153506.7 ENSMUSP00000118170.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153506.7Link to Ensembl Protein Viewer:ENSMUSP00000118170.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153506Re-query CCDS DB by Protein ID:ENSMUSP00000118170
Original member NCBI NM_001293644.1 NP_001280573.1 Updated not alive Link to Nucleotide Sequence:NM_001293644.1Link to Protein Sequence:NP_001280573.1Re-query CCDS DB by Nucleotide ID:NM_001293644Re-query CCDS DB by Protein ID:NP_001280573
Current member NCBI NM_001293644.2 NP_001280573.2 Pending alive Link to Nucleotide Sequence:NM_001293644.2Link to Protein Sequence:NP_001280573.2Re-query CCDS DB by Nucleotide ID:NM_001293644Re-query CCDS DB by Protein ID:NP_001280573Link to BLAST:NP_001280573.2

Chromosomal Locations for CCDS 80021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129915743 129915819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129916939 129917142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129926365 129926469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129933583 129933753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129934625 129934700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129969950 129970075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGCCAGGAGCTCTGTCCGGCAGGAGGATGCTCCCGAGCGGGCTATGTCTGGGTCGGTGGCAGCTGCTGC
GGACGATCCGAGCCCGCGGCCGCGGGGATCCCAGGGAGCTGCCATCCACACCCCAGGTTTTATGTATGAA
ACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGAAATAACA
GTTACTTATAAACACGGCCTTCCCTTGGTAACCCTCACTCTGCCATCCAGAAAAGAGCGCTGCCAGTTTG
TAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGGACTTACAGAATGAGGATAAAGGCATCAA
AACTGCAGCCATCATCACGGCAGATGGCAGTGAAATTCCAGCTTCAACATTGATGGACACTTTGCTAATG
ACAGATTTTAAGCTCATCATTAACAAACTACGGTATGATATACGGTGTCACAAGAAAGGTCAAAGCTGCA
ATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCCGGCTTAGCTCTGCTCTCCGTGCAGG
GCGGGGCGCTGGCCTGGCTTACTTGGTGGGTGTACTCCTGGGATATCATGGAGCCAGTTACCTTCTTCCT
GTCGTTTGCGAATTCCATCGTCTTTTTTGCATACTTCATCATAACCCGGCAGAACTACACATACTCATCC
CTCCGGAGCAGGCAGTTTCTTCAGTTCTTCCACAAGAAATCGCAGCGGCGGTGTTTTGA

Translation (252 aa):
MPGALSGRRMLPSGLCLGRWQLLRTIRARGRGDPRELPSTPQVLCMKLYGNPKYHQALHYGTVEPQDEIT
VTYKHGLPLVTLTLPSRKERCQFVVKPMLSTVGSFLQDLQNEDKGIKTAAIITADGSEIPASTLMDTLLM
TDFKLIINKLRYDIRCHKKGQSCNRSPVGSQHQWSPVGRLSSALRAGRGAGLAYLVGVLLGYHGASYLLP
VVCEFHRLFCILHHNPAELHILIPPEQAVSSVLPQEIAAAVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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