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Report for CCDS79728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79728.1 Public Mus musculus 2 Dclre1c 23 108 98 CCDS HistoryNCBI Gene:227525Re-query CCDS DB by CCDS ID:79728.1Re-query CCDS DB by GeneID:227525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115066.7 ENSMUSP00000110718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115066.7Link to Ensembl Protein Viewer:ENSMUSP00000110718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115066Re-query CCDS DB by Protein ID:ENSMUSP00000110718
Original member Current member NCBI NM_001302674.1 NP_001289603.1 Accepted alive Link to Nucleotide Sequence:NM_001302674.1Link to Protein Sequence:NP_001289603.1Re-query CCDS DB by Nucleotide ID:NM_001302674Re-query CCDS DB by Protein ID:NP_001289603Link to BLAST:NP_001289603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289603.1 473 Q8K4J0-3 473 100% 0 0

Chromosomal Locations for CCDS 79728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3433790 3433806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437030 3437086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437676 3437748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437952 3438092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3440758 3440859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3443654 3443790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3444201 3444255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3447074 3447162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3450279 3450373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3452848 3453198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3457544 3457584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3458691 3458954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGAGGCTTCGGGTGAGGAGACTTCAGACTGGCAAAAGGAGAAGCTTCCAGAATGGAGCTTCTGCACTCT
GGAGAGTAAAAGACATCCAAAGTGTGTATTTAGACACGACTTTCTGTGACCCAAGGTTTTATCAGATCCC
AAGTCGTGAGCAGTGTTTGAGGGGCATTTTGGAGCTGGTTCGGAGCTGGGTCACTAGGAGTCCGCACCAC
GTCGTGTGGCTGAACTGTAAAGCAGCTTATGGCTACGAGTATTTATTCACCAACCTAAGCGAGGAGCTGG
GAGTTCAGGTTCATGTGGACAAGCTGGACATGTTTAAAAACATGCCTGATATCCTGCACCATCTCACAAC
GGACAGAAACACCCAGATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAGTGGAATAAACTA
CCCTGTGGTATAACTTCCCAAAACAAAACTGCACTCCACACAATCAGCATCAAGCCATCTACCATGTGGT
TTGGAGAGAGGACCAGAAAAACCAACGTGATCGTTAGGACTGGAGAGAGCTCATACAGAGCTTGCTTCTC
TTTTCACTCCTCCTTCAGTGAGATTAAAGATTTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCAAAT
GTCATCCCAGTTGGCCTCACTGTGGATAAGGTCATGGACGTTTTAAAGCCTCTGTGCCGGTCTCCCCAAA
GTGTTGAGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGA
AGACGATGATCTCTTTGATGACCCTCTACCGACACCTTTAAGGCACAAAGTTCCGTACCAGCTAACTCTT
CAGCCTGAGCTGTTTTCAATGAAGGCACTGCCACTAGACCAGCCTGAACTGAGACAAAGCCCAGGAGGCT
GCAAAGCAGAGAGTGTGTGGAGCCCTTCTTTGGCTAACTTCATAGACTGTGAAGAATCCAACAGCGACAG
TGGAGAAGAGCTAGAAACCCCACCACCCTCACTGCAGGGAGGTCTGGGCCCCTCGACACTCGTCCAGCAA
AATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGTGG
ACACCATGATTAGAACTCCCAGACCCAGAAAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGATGCTTCT
CCAGAACCTGGAAATACAGGAAGAGAAACATATATTTGAGAACAGGGGCTGGAAGATGGCTGGGCAGGTA
AAGGGTAGCTGTGGTCTTTTGGAGGGCCAGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCT
CAAACTCCAGCTTCTGGCCTCCATGGCACCTGCATTCACATGCGCACACACAAATCTTTACCTTTAAAAA
AAAAACCAAAACTTTACTTTAG

Translation (473 aa):
MRLRVRRLQTGKRRSFQNGASALWRVKDIQSVYLDTTFCDPRFYQIPSREQCLRGILELVRSWVTRSPHH
VVWLNCKAAYGYEYLFTNLSEELGVQVHVDKLDMFKNMPDILHHLTTDRNTQIHACRHPKAEECFQWNKL
PCGITSQNKTALHTISIKPSTMWFGERTRKTNVIVRTGESSYRACFSFHSSFSEIKDFLSYICPVNVYPN
VIPVGLTVDKVMDVLKPLCRSPQSVEPKYKPLGKLKRARTIHLDSEEDDDLFDDPLPTPLRHKVPYQLTL
QPELFSMKALPLDQPELRQSPGGCKAESVWSPSLANFIDCEESNSDSGEELETPPPSLQGGLGPSTLVQQ
NADPDVDIPQWEVFFKRRDEITVDTMIRTPRPRKMKGCGQWSLKMLLQNLEIQEEKHIFENRGWKMAGQV
KGSCGLLEGQSSLPTFKLATSLASNSSFWPPWHLHSHAHTQIFTFKKKTKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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