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Report for CCDS797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
797.1 Public Homo sapiens 1 PSRC1 24 110 108 CCDS HistoryNCBI Gene:84722Re-query CCDS DB by CCDS ID:797.1Re-query CCDS DB by GeneID:84722See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 797.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369903.6 ENSP00000358919.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369903.6Link to Ensembl Protein Viewer:ENSP00000358919.2Re-query CCDS DB by Nucleotide ID:ENST00000369903Re-query CCDS DB by Protein ID:ENSP00000358919
Original member Current member EBI ENST00000369907.7 ENSP00000358923.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369907.7Link to Ensembl Protein Viewer:ENSP00000358923.3Re-query CCDS DB by Nucleotide ID:ENST00000369907Re-query CCDS DB by Protein ID:ENSP00000358923
Original member Current member EBI ENST00000369909.7 ENSP00000358925.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369909.7Link to Ensembl Protein Viewer:ENSP00000358925.2Re-query CCDS DB by Nucleotide ID:ENST00000369909Re-query CCDS DB by Protein ID:ENSP00000358925
Original member Current member EBI ENST00000409267.5 ENSP00000386323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409267.5Link to Ensembl Protein Viewer:ENSP00000386323.1Re-query CCDS DB by Nucleotide ID:ENST00000409267Re-query CCDS DB by Protein ID:ENSP00000386323
Original member Current member NCBI NM_001032291.3 NP_001027462.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001032291.3Link to Protein Sequence:NP_001027462.1Re-query CCDS DB by Nucleotide ID:NM_001032291Re-query CCDS DB by Protein ID:NP_001027462Link to BLAST:NP_001027462.1
Original member Current member NCBI NM_001394002.1 NP_001380931.1 Accepted alive Link to Nucleotide Sequence:NM_001394002.1Link to Protein Sequence:NP_001380931.1Re-query CCDS DB by Nucleotide ID:NM_001394002Re-query CCDS DB by Protein ID:NP_001380931Link to BLAST:NP_001380931.1
Original member Current member NCBI NM_032636.8 NP_116025.1 Accepted alive Link to Nucleotide Sequence:NM_032636.8Link to Protein Sequence:NP_116025.1Re-query CCDS DB by Nucleotide ID:NM_032636Re-query CCDS DB by Protein ID:NP_116025Link to BLAST:NP_116025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027462.1 333 Q6PGN9-2 333 100% 0 0
NP_001380931.1 333 Q6PGN9-2 333 100% 0 0
NP_116025.1 333 Q6PGN9-2 333 100% 0 0

Chromosomal Locations for CCDS 797.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109280153 109280156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109280396 109280489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109280777 109281046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109281137 109281251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109281619 109282060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109282518 109282575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109282680 109282698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGAGGATTTGGAGGAAGATGTAAGGTTTATTGTGGATGAGACCTTGGACTTTGGGGGGCTGTCACCAT
CTGACAGCCGTGAGGAGGAAGACATAACAGTGTTGGTGACTCCAGAGAAACCACTTCGACGGGGCCTCTC
CCACCGAAGTGACCCAAATGCAGTGGCACCTGCCCCCCAGGGTGTGAGGCTCAGCCTAGGCCCCCTCAGT
CCAGAGAAGCTGGAGGAGATCCTCGATGAGGCCAACCGGCTGGCCGCTCAGCTGGAGCAGTGTGCCCTGC
AGGATCGGGAGAGCGCAGGCGAGGGCCTGGGGCCTCGCCGAGTGAAGCCCAGTCCTCGGCGGGAGACCTT
TGTGCTGAAGGATAGTCCTGTCCGAGACCTGCTGCCCACTGTGAACTCTTTGACGCGGAGCACCCCCTCC
CCAAGCAGCCTGACGCCTCGACTCCGGAGTAATGATAGGAAGGGGTCAGTCAGGGCTCTCCGGGCTACAT
CTGGAAAGAGGCCCTCCAACATGAAGAGGGAGTCACCCACTTGCAATCTGTTCCCTGCATCCAAAAGCCC
AGCATCTTCTCCTCTTACCCGATCGACTCCCCCAGTCCGGGGGAGAGCCGGGCCCAGTGGGAGAGCAGCA
GCCAGCCCACCCACCCCCATCAGATCCGTCCTGGCCCCACAGCCTTCTACCAGCAACTCTCAACGCCTGC
CCCGGCCGCAGGGAGCAGCTGCTAAATCTTCCAGTCAACTGCCCATTCCCTCGGCCATCCCCAGGCCTGC
CAGCCGAATGCCACTCACCAGCCGGAGTGTGCCACCTGGCAGAGGTGCCCTACCTCCGGATTCTCTGTCA
ACTCGAAAAGGGCTTCCAAGACCAAGCACTGCAGGACACAGAGTGCGGGAAAGTGGACACAAGGTTCCTG
TTTCCCAGCGACTAAATCTTCCTGTCATGGGTGCCACTCGCAGCAATCTGCAGCCCCCCAGGAAAGTGGC
AGTCCCAGGACCTACCAGGTAA

Translation (333 aa):
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLS
PEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPS
PSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA
ASPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLS
TRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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