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Report for CCDS72384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72384.1 Public Mus musculus X Mcf2 23 108 98 CCDS HistoryNCBI Gene:109904Re-query CCDS DB by CCDS ID:72384.1Re-query CCDS DB by GeneID:109904See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228150.1 ENSMUSP00000154494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228150.1Link to Ensembl Protein Viewer:ENSMUSP00000154494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228150Re-query CCDS DB by Protein ID:ENSMUSP00000154494
Original member NCBI NM_001289731.1 NP_001276660.1 Updated not alive Link to Nucleotide Sequence:NM_001289731.1Link to Protein Sequence:NP_001276660.1Re-query CCDS DB by Nucleotide ID:NM_001289731Re-query CCDS DB by Protein ID:NP_001276660
Current member NCBI NM_001289731.2 NP_001276660.1 Accepted alive Link to Nucleotide Sequence:NM_001289731.2Link to Protein Sequence:NP_001276660.1Re-query CCDS DB by Nucleotide ID:NM_001289731Re-query CCDS DB by Protein ID:NP_001276660Link to BLAST:NP_001276660.1

Chromosomal Locations for CCDS 72384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 60056664 60056690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60059847 60059953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60062080 60062222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60063094 60063157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60064597 60064675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60067155 60067247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60077181 60077402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60082859 60082984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60084401 60084493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60107456 60107548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109417 60109486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109756 60109871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60110568 60110634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60113379 60113458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60115103 60115146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60120940 60121111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60123116 60123307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60124709 60124900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60127016 60127135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60129297 60129411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60130044 60130177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60133608 60133757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60135379 60135495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60136254 60136373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60152900 60152990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60155603 60155717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60160227 60160295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60178582 60178906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3336 nt):
ATGGCGGAAGCAGGGCCCCCTCCAGCAAGGTTCCCTCCAGCAAGGCTCCCTCCAGCAGGGTCCTCTCGGG
CTGGGCTCCCTCCAACAGGGTCCCCTCCCGCTTCCACTCCGGCCCTGGCCTCGCAGTGGCTGGCGGTCAA
GCGTTTGCCTAGGGCTGCCGCCAAGGCGCCCAATCTCCAGCTGAATCAGGACCACTGTTCTTTCGTGCCG
TTCACGCAGGCGGTCCCGGTGCAGGTGGACATGGCCATGGCCCTGCATCGCGTTAGGATCGCGGAGAAGT
ACGGGAAGAACTACCTCTGCTTGCTGCAGGCAGTCTTCCTAGCAGAAACTGGGCTGCTCCTCCAGTTAAA
GGACATCAATCATTTCCTAATGCAAGACATTGCTTTCCTGTCTGGTGGCCGGGGAAAGGACAATGCTTGG
ATCATTACATTTCCAGAAAACTGTAACTTCAGATGCATACCAGAGGAAGTAATTGCAAAAGTGCTCAATT
ACTTGACATCTATTGCAAGGCAAAGTGGATCTGACTCCCGATTTACTATTATTCTAGATCGAAGACTGGA
TACATGGGCTTCCCTCAAAATTTCCCTCCAGAAAATCTCAGCCTCCTTCCCTGGGAGCTTACACTTAGTC
CTGGTTTTGCGTCCTACCAGTTTTCTTCAACGGACTTTCACGGACATTGGATTTCGATTTAGCCAGGAGG
ATTTTATGCTGAAATTACCAGTTGTTATGCTGAGCTCAGTTAGTGATTTGCTGACATACATTGATGACAA
GCAGTTAACCCCTGAGTTAGGCGGCACCTTGCAGTACTGCCACAGTGAATGGATCATCTTCAGAAATGCC
ATAGAGAAGTTTGCTGTCACAGTGAAAGAAATGGCTCAGATGTTGCAATCCTTTGGAACAGAATTGGCTG
AAACAGAGCTACCACAGGATATCCTTTCAATAGAAGAGATTCTGGCAGGTCGAGCCGAAAGGTATCACCT
GTTGAAGAATGACTTAACTGCTGTAACCAAAGAAGGAAAAGTTCTGCTCATGAACCTGCAAGTGCCTGCC
ACTGAAGAAACTGTCAGTTCAAGCCTTGAATGTACTCAGCACATAAATGGCGACTGGCAAACTATTAAAA
AGTTGCTGGCTCAGGTGCATGATATGGAAACTGCTTTTGATGGATTTTGGGAAAAACATCAGCTGAAAAT
GGAGCAGTATCTGCAACTGTGGAAGTTTGAACAAGACTTTCAAGAGGCTGTGACTCAAGTTGAATTTTTA
TTAAGTCAACAAAGAGAACTGGGTGATATAACAGGGAACTTAGCTCAAGTAAAACAAAGACTTAAAAAAC
TAGAGATCTTAGATGATAAATCTCAGGAACTGTTAACCAAGGCCCGGATTGTGATACTACGTGGCCACAA
GCTGGCATCGAATCACCACTATGCACTTGATTTAATTTGCCAGCGATGCAATGAACTACGCTACCTTTCT
GATATTTTAGTTAATGAGATCAGAACAAAGCGGGTCCAACTGAGCAGGACTTTCAAAGTGCATAGACTCT
TACAGCAGGCACGTCAGTGCTGTGATCAAGGGGAATGCCTCCTGGCTAGCCAAGGAATGGATAAGTTTCA
GACTAAAGAAGATGCTCAGAAAGCCCTTCAGGATGTGGACAATTTCCTTCAAATGGCCATGCCTTTCATC
AATTATGATATCGAAAGCCTGCAATATGAATTTGATGTACTCCTATCTCCTGAACTCAAGGCTCAAATGC
AGAATATACAACTAAAGCTTGAAAATATTCGAAGTGCATTTCAGAACCAACAGGCTGGTTGTAAGAGCCT
AAAAGAAGTACCCGAGGGGGCGTTCCAGAACTTGGTTCCTGCATCTGAAAATGTGATGCGGTCCAGAATG
ATATTCTTTTCACCGAAACATGTGAAAAAGTCTTGGAGACAGATTCACGCTCAGAGCAATGTGAAAGTTG
AAGCCGTTGAGGATAGCCAAGAGAAGAATTCTGATCAGTCTCCCAAATTGGACAATAGCTTGGATATTTT
AAAGAACCATGTCCTAAATGAGCTGATACAGACAGAGAGAGCATATGTTCGAGAGCTGTTTACTGTTTTG
TTGGGCTACAGATCTGAGATGGACAATCCACAGATGTTTGATCTTATGCCACCTCTCCTGAGAAATAAAA
AGGATGTTCTCTTTGGAAATATGGCAGAAATATACGAATTCCATAACAACATTTTCATGAGCAGACTGGA
AGATTGCTCTGATGCTCCAGAAAGAGTGGGACCTTGCTTCCTGGAAAGGAAGGATGATTTTCAGATGTAT
GCCAAATATTGTCAGAATAAACCCAGGTCAGAGTTAATTTGGAGGAAGTATTCTGAATGTGCCTTTTTCC
AGGAATGTCAACGAAAATTGAAACATCGACTTGGTCTGGATTCCTATTTGCTCAAACCTGTTCAACGAAT
CACTAAGTATCAGTTGCTTTTAAAGGAGCTTTTAAAGTATAGCAAAGAAGGTGAAGGAACTACTAAATTA
AAGGAGGCACTTGACTCAATGCTGGAGCTGCTGAAGTCAGTGAATGACTCCATGCATCAGACTGCCATCA
ATGGCTATGTTGGAAATATAAATGAGCTGGGCAAGATGGTTCTTCAAGGTTCCTTCAATGTTTGGCTAGG
ACACCGGAAAGGTGCTACAAAAATGAAGGATTTTGCACGTTTCAAACCCATGCAGAGACATCTTTTCTTA
TATGAAAAAGCTGTTATGTTTTGTAAGAGGCGTTTCGAATCTGGAGAAGGTGCTGATAGATACCCATCAT
ACAGTTTTAAGCACTGCCTAAAAATGGAAGATGTTGGCATCACAGAACATGTGAAAGGTGATAACCGCAA
ATTTGAAATACGGTATAGTGAGAAGGAAGAAATTTACATTGTTCAGGCTCCAAATGTTGATGTGAAGATG
TTATGGCTAAAAGAAATAAGAAAAATTTTGGTGCAGCAGAAGGAACTTATGACTGCTAAAACCCAGCAGG
ATCAGGCACTAGACCAGGACCAACTTTTCCCCCAGCAGCAGAATGCCGAGCTATGCAAAAGCTCACCTTT
TTGTGTGTGTGAGGAAACTCTTTTCAACGCCACAGAAGCAGGAGCAGAAGTGGAGCAAGCTGGTGCCCTG
ATAAAGGTCAGGGAGGCAGCTGTGCTAGCTCAAGCAGAGGCAAGTTCAGCAGCTTGGAATGGGATGTTAC
CATCTGCAGAAGGCGCTGCTGCAATTGCTGAACATTCATACAATTATTTCTCCTCTAACAATGACCATGG
AGAAGATAGGACACAAATGAGACACATGTCGGAGGTGACATTCTAG

Translation (1111 aa):
MAEAGPPPARFPPARLPPAGSSRAGLPPTGSPPASTPALASQWLAVKRLPRAAAKAPNLQLNQDHCSFVP
FTQAVPVQVDMAMALHRVRIAEKYGKNYLCLLQAVFLAETGLLLQLKDINHFLMQDIAFLSGGRGKDNAW
IITFPENCNFRCIPEEVIAKVLNYLTSIARQSGSDSRFTIILDRRLDTWASLKISLQKISASFPGSLHLV
LVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTYIDDKQLTPELGGTLQYCHSEWIIFRNA
IEKFAVTVKEMAQMLQSFGTELAETELPQDILSIEEILAGRAERYHLLKNDLTAVTKEGKVLLMNLQVPA
TEETVSSSLECTQHINGDWQTIKKLLAQVHDMETAFDGFWEKHQLKMEQYLQLWKFEQDFQEAVTQVEFL
LSQQRELGDITGNLAQVKQRLKKLEILDDKSQELLTKARIVILRGHKLASNHHYALDLICQRCNELRYLS
DILVNEIRTKRVQLSRTFKVHRLLQQARQCCDQGECLLASQGMDKFQTKEDAQKALQDVDNFLQMAMPFI
NYDIESLQYEFDVLLSPELKAQMQNIQLKLENIRSAFQNQQAGCKSLKEVPEGAFQNLVPASENVMRSRM
IFFSPKHVKKSWRQIHAQSNVKVEAVEDSQEKNSDQSPKLDNSLDILKNHVLNELIQTERAYVRELFTVL
LGYRSEMDNPQMFDLMPPLLRNKKDVLFGNMAEIYEFHNNIFMSRLEDCSDAPERVGPCFLERKDDFQMY
AKYCQNKPRSELIWRKYSECAFFQECQRKLKHRLGLDSYLLKPVQRITKYQLLLKELLKYSKEGEGTTKL
KEALDSMLELLKSVNDSMHQTAINGYVGNINELGKMVLQGSFNVWLGHRKGATKMKDFARFKPMQRHLFL
YEKAVMFCKRRFESGEGADRYPSYSFKHCLKMEDVGITEHVKGDNRKFEIRYSEKEEIYIVQAPNVDVKM
LWLKEIRKILVQQKELMTAKTQQDQALDQDQLFPQQQNAELCKSSPFCVCEETLFNATEAGAEVEQAGAL
IKVREAAVLAQAEASSAAWNGMLPSAEGAAAIAEHSYNYFSSNNDHGEDRTQMRHMSEVTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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