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Report for CCDS72051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72051.1 Public Mus musculus 7 Ate1 23 108 98 CCDS HistoryNCBI Gene:11907Re-query CCDS DB by CCDS ID:72051.1Re-query CCDS DB by GeneID:11907See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178534.7 ENSMUSP00000136956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178534.7Link to Ensembl Protein Viewer:ENSMUSP00000136956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178534Re-query CCDS DB by Protein ID:ENSMUSP00000136956
Original member NCBI NM_001271343.1 NP_001258272.1 Updated not alive Link to Nucleotide Sequence:NM_001271343.1Link to Protein Sequence:NP_001258272.1Re-query CCDS DB by Nucleotide ID:NM_001271343Re-query CCDS DB by Protein ID:NP_001258272
Current member NCBI NM_001271343.2 NP_001258272.1 Accepted alive Link to Nucleotide Sequence:NM_001271343.2Link to Protein Sequence:NP_001258272.1Re-query CCDS DB by Nucleotide ID:NM_001271343Re-query CCDS DB by Protein ID:NP_001258272Link to BLAST:NP_001258272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258272.1 509 Q9Z2A5-4 509 100% 0 0

Chromosomal Locations for CCDS 72051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130394558 130394736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130418448 130418568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130464131 130464230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130467256 130467437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130481683 130481715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130503722 130503850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130507482 130507699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130509007 130509258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130510811 130510914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130513762 130513824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130516105 130516168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130519877 130519961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCCTCGGTGGTGGAATACAAGGGCCTGAAGGCCGGCTACTACTGCGGCTACTGCGAGTCCAGGGAGG
GCAAGACGTCGTGTGGCATGTGGGCACATTCCATGACAGTGCAGGATTATCAGGATCTTATAGACCGAGG
ATGGAGAAGAAGTGGGAAATATGTGTACAAACCTGTCATGGATCAAACATGCTGTCCTCAGTATACAATA
AGGTGTCATCCTTTACAGTTTCAGCCATCAAAATCTCACAAGAAAGTTTTGAAAAAAATGCTGAAATTTC
TGGCTAAAGGAGAGATCTCGAAAGGCAATTGTGAGGATGAGCCCATGGATTCTACAGTGGAGGATGCTGT
TGACGGTGACTTTGCATTAATTAACAAGCTGGATATAAAGTGTGATCTCAAAACACTCAGTGACCTCAAA
GGAAGCATAGAGAGTGAAGAGAAGGAGAAAGAAAAGAGTATAAAGAAAGAAGGGTCTAAAGAATTCATTC
ATCCACAATCTATAGAGGAGAAGTTGGGCTCTGGTGAACCATCACATCCAATCAAAGTTCATATTGGTCC
TAAGCCAGGCAAAGGGGCTGACTTGAGTAAGCCTCCATGTCGGAAAGCAAGGGAAATGAGGAAAGAAAGG
CAAAGATTAAAACGGATGCAGCAGGCCTCAGCTGCAGCCTCGGAGGCTCAAGGTCAGCCAGTCTGTTTGT
TACCAAAGGCTAAATCCAACCAGCCCAAGTCACTGGAAGATTTGATTTTTCAATCTTTACCAGAAAATGC
ATCGCACAAGTTAGAGGTGAGGCTAGTACCTGCCTCCTTTGAGGACCCAGAGTTCAACTCATCCTTCAAC
CAGTCCTTTTCTTTATATACCAAGTATCAAGTGGCTATACACCAGGAAGCACCTGAAATATGTGAAAAGT
CTGAGTTTACAAGATTCCTTTGCAGCTCACCATTGGAGGCAGAGCACCCTGCTGATGGACCAGAATGTGG
TTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCTGTGGGGGTGTTAGACATTCTC
CCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGATTATTCATTTCTGTCTTTGGGTGTCTATT
CAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATCGCAACTCAGCTATTATTATAT
GGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGGGTCAATATAGACCTTCTGATTTGCTGTGT
CCTGAGACGTATGTCTGGGTGCCCATTGAGCAGTGCCTGCCTTCTCTGGACAACTCCAAGTACTGCCGTT
TCAACCAGGACCCCGAAGCAGAGGATGAAGGACGCAGTAAGGAACTTGACCGACTAAGGGTGTTTCACAG
ACGATCTGCCATGCCTTACGGTGTTTATAAGAATCACCAAGAAGACCCAAGTGAGGAGGCTGGTGTGCTG
GAGTATGCAAACCTCGTAGGACAGAAGTGCTCGGAGAGGATGCTGCTGTTCAGACACTGA

Translation (509 aa):
MASVVEYKGLKAGYYCGYCESREGKTSCGMWAHSMTVQDYQDLIDRGWRRSGKYVYKPVMDQTCCPQYTI
RCHPLQFQPSKSHKKVLKKMLKFLAKGEISKGNCEDEPMDSTVEDAVDGDFALINKLDIKCDLKTLSDLK
GSIESEEKEKEKSIKKEGSKEFIHPQSIEEKLGSGEPSHPIKVHIGPKPGKGADLSKPPCRKAREMRKER
QRLKRMQQASAAASEAQGQPVCLLPKAKSNQPKSLEDLIFQSLPENASHKLEVRLVPASFEDPEFNSSFN
QSFSLYTKYQVAIHQEAPEICEKSEFTRFLCSSPLEAEHPADGPECGYGSFHQQYWLDGKIIAVGVLDIL
PYCVSSVYLYYDPDYSFLSLGVYSALREIAFTRQLHEKTSQLSYYYMGFYIHSCPKMRYKGQYRPSDLLC
PETYVWVPIEQCLPSLDNSKYCRFNQDPEAEDEGRSKELDRLRVFHRRSAMPYGVYKNHQEDPSEEAGVL
EYANLVGQKCSERMLLFRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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