NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70978.1 Public Mus musculus 2 Il15ra 23 108 98 CCDS HistoryNCBI Gene:16169Re-query CCDS DB by CCDS ID:70978.1Re-query CCDS DB by GeneID:16169See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114834.9 ENSMUSP00000110483.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114834.9Link to Ensembl Protein Viewer:ENSMUSP00000110483.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114834Re-query CCDS DB by Protein ID:ENSMUSP00000110483
Original member NCBI NM_001271500.1 NP_001258429.1 Updated not alive Link to Nucleotide Sequence:NM_001271500.1Link to Protein Sequence:NP_001258429.1Re-query CCDS DB by Nucleotide ID:NM_001271500Re-query CCDS DB by Protein ID:NP_001258429
Current member NCBI NM_001271500.2 NP_001258429.1 Accepted alive Link to Nucleotide Sequence:NM_001271500.2Link to Protein Sequence:NP_001258429.1Re-query CCDS DB by Nucleotide ID:NM_001271500Re-query CCDS DB by Protein ID:NP_001258429Link to BLAST:NP_001258429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258429.1 197 Q60819-3 197 100% 0 0

Chromosomal Locations for CCDS 70978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11705848 11705944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11718264 11718458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11720013 11720105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11724096 11724128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11730571 11730646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11733150 11733249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGCCTCGCCGCAGCTCCGGGGCTATGGAGTCCAGGCCATTCCTGTGTTGCTGCTGCTGCTGTTGCTAC
TGTTGCTCCCGCTGAGGGTGACGCCGGGCACCACGTGTCCACCTCCCGTATCTATTGAGCATGCTGACAT
CCGGGTCAAGAATTACAGTGTGAACTCCAGGGAGAGGTATGTCTGTAACTCTGGCTTTAAGCGGAAAGCT
GGAACATCCACCCTGATTGAGTGTGTGATCAACAAGAACACAAATGTTGCCCACTGGACAACTCCCAGCC
TCAAGTGCATCAGAGACCCCTCCCTAGCTCACTACAGTCCAGTGCCAACAGTAGTGACACCAAAGGTGAC
CTCACAGCCAGAGAGCCCCTCCCCCTCTGCAAAAGAGATTTCTCCCCACAGTTCCAAAATGACGAAAGTG
GCCATCTCTACATCGGTCCTCTTGGTTGGTGCAGGGGTTGTGATGGCTTTCCTGGCCTGGTACATCAAAT
CAAGGCAGCCTTCTCAGCCGTGCCGTGTTGAGGTGGAAACCATGGAAACAGTACCAATGACTGTGAGGGC
CAGCAGCAAGGAGGATGAAGACACAGGAGCCTAA

Translation (197 aa):
MASPQLRGYGVQAIPVLLLLLLLLLLPLRVTPGTTCPPPVSIEHADIRVKNYSVNSRERYVCNSGFKRKA
GTSTLIECVINKNTNVAHWTTPSLKCIRDPSLAHYSPVPTVVTPKVTSQPESPSPSAKEISPHSSKMTKV
AISTSVLLVGAGVVMAFLAWYIKSRQPSQPCRVEVETMETVPMTVRASSKEDEDTGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH