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Report for CCDS70660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70660.1 Public Mus musculus 15 Ncaph2 23 108 98 CCDS HistoryNCBI Gene:52683Re-query CCDS DB by CCDS ID:70660.1Re-query CCDS DB by GeneID:52683See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036987.11 ENSMUSP00000036900.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036987.11Link to Ensembl Protein Viewer:ENSMUSP00000036900.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036987Re-query CCDS DB by Protein ID:ENSMUSP00000036900
Original member NCBI NM_001271600.1 NP_001258529.1 Updated not alive Link to Nucleotide Sequence:NM_001271600.1Link to Protein Sequence:NP_001258529.1Re-query CCDS DB by Nucleotide ID:NM_001271600Re-query CCDS DB by Protein ID:NP_001258529
Current member NCBI NM_001271600.2 NP_001258529.1 Accepted alive Link to Nucleotide Sequence:NM_001271600.2Link to Protein Sequence:NP_001258529.1Re-query CCDS DB by Nucleotide ID:NM_001271600Re-query CCDS DB by Protein ID:NP_001258529Link to BLAST:NP_001258529.1

Chromosomal Locations for CCDS 70660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89355836 89355850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89360356 89360457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89363431 89363486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89363605 89363689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89363766 89363834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89363922 89364001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89364088 89364242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89364613 89364696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89365234 89365331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89369384 89369455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89369616 89369682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89369808 89369915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370025 89370078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370238 89370308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370395 89370488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370604 89370675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370753 89370808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89370892 89370993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89371094 89371243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89371311 89371451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGAGGATGTGGAGCTGGACCAGATCTGCATTTCTTTTGATGAAGGCAAAACCACAATGAACTTCATTG
AGGCAGCACTGTTGATCCAGGGCTCAGCCTGTGTCTACAGTAAGAAGGTGGAGTACCTCTACTCGCTGGT
CTACCAGGCTCTCGATTTTATTTCTGGCAAGAGGCGGGCCAAACAGCTCTCCTTAGTTCAGGAAGATGGG
AGCAAGAAGACTGTCAACTCAGAGACTCCCTGTGAAACAGAGAATGAGTTCCTGTCACTGGACGACTTCC
CTGACTCCCGGGCTAATGTGGATCTGAAAAATGATCAGGCATCCAGTGAGCTGCTTATCATACCCCTACT
GCCCATGGCCCTGGTGGCCCCTGATGAAGTGGAAAAGAACAGCAGCCCCTTGTATAGCTGTCAGGGTGAC
ATCTTGGCCAGCCGGAAGGATTTCAGGATGAACACGTGTATGCCTAACCCCAGAGGCTGCTTTATGTTAG
ATCCAGTGGGAATGTGTCCTGTGGAGCCTGTGGTGCCCGTGGAGCCATACCCCATGTCAAGGAGCCAGAA
AGATCCTGAGGACGCTGAGGAGCAGCCCATGGAAGTGTCTAGGAACGGGAGTCCTGTTCCTGTACCCGAC
ATCTCCCAAGAGCCAGATGGTCCAGCGCTCAGCGGTGGAGAGGAGGATGCAGAGGATGGAGCAGAGCCCC
TGGAGGTTGCTCTAGAGCCTGCAGAGCCAAGGACCTCACAGCAGAGTGCCATCTTGCCAAGGAGATACAT
GCTGCGGGAACGACAAGGGGCACCGGAGCCTGCCTCCCGGCTACAGGAGACCCCAGACCCCTGGCAGAGC
CTGGACCCTTTTGACTCCTTGGAATCTAAGGTCTTCCAGAAAGGGAAACCCTATTCTGTGCCACCCGGTG
TGGAGGAGGCTCCAGGACAGAAGCGCAAGAGGAAGGGTGCCACCAAGTTGCAGGACTTCCACAAGTGGTA
CCTGGATGCCTATGCTGAACACCCTGACGGCAGGAGGGCTCGGCGGAAGGGCCCAACCTTTGCAGACATG
GAAGTCCTGTACTGGAAACATGTGAAAGAACAGCTCGAGACCCTTCAGAAGCTGCGGAGACGTAAGATCA
ACGAGAGATGGCTACCTGGGGCCAAGCAGGATCTGTGGCCTACAGAGGAGGATCGCTTGGAAGAGTCCCT
CGAGGACCTCGGGGTAGCAGATGACTTTCTAGAGCCCGAGGAGTACGTGGAGGAGCCTGCGGGGGTGATG
CCCGAGGAAGCTGCTGACCTCGATGCAGAGGCCATGCCAGAGTCCCTGAGATACGAGGAGCTGGTCCGGA
GAAATGTGGAACTCTTCATTGCCACCTCCCAGAAGTTTATCCAGGAGACAGAGCTGAGCCAACGCATCAG
GGACTGGGAAGATACCATCCAGCCCCTGCTCCAGGAGCAGGAGCAGCATGTGCCCTTTGATATCCATATC
TACGGGGACCAGTTGGCTTCACGGTTCCCCCAGCTCAATGAATGGTGTCCCTTTTCAGAGCTTGTAGCAG
GGCAGCCTGCTTTTGAGGTGTGCCGCTCCATGCTGGCCTCCTTGCAACTGGCTAATGACTACACAGTGGA
GATCACTCAGCAGCCAGGACTGGAGGCAGCTGTGGACACAATGTCTCTGAGACTGCTCACACACCAGCGA
GCCCACACCCGCTTCCAGACCTATGCTGCACCATCCATGGCCCAGCCTTGA

Translation (576 aa):
MEDVELDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSLVQEDG
SKKTVNSETPCETENEFLSLDDFPDSRANVDLKNDQASSELLIIPLLPMALVAPDEVEKNSSPLYSCQGD
ILASRKDFRMNTCMPNPRGCFMLDPVGMCPVEPVVPVEPYPMSRSQKDPEDAEEQPMEVSRNGSPVPVPD
ISQEPDGPALSGGEEDAEDGAEPLEVALEPAEPRTSQQSAILPRRYMLRERQGAPEPASRLQETPDPWQS
LDPFDSLESKVFQKGKPYSVPPGVEEAPGQKRKRKGATKLQDFHKWYLDAYAEHPDGRRARRKGPTFADM
EVLYWKHVKEQLETLQKLRRRKINERWLPGAKQDLWPTEEDRLEESLEDLGVADDFLEPEEYVEEPAGVM
PEEAADLDAEAMPESLRYEELVRRNVELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQHVPFDIHI
YGDQLASRFPQLNEWCPFSELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEAAVDTMSLRLLTHQR
AHTRFQTYAAPSMAQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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