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Report for CCDS6957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6957.1 Public Homo sapiens 9 GFI1B 24 110 108 CCDS HistoryNCBI Gene:8328Re-query CCDS DB by CCDS ID:6957.1Re-query CCDS DB by GeneID:8328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6957.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339463.7 ENSP00000344782.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339463.7Link to Ensembl Protein Viewer:ENSP00000344782.3Re-query CCDS DB by Nucleotide ID:ENST00000339463Re-query CCDS DB by Protein ID:ENSP00000344782
Original member Current member EBI ENST00000372122.4 ENSP00000361195.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372122.4Link to Ensembl Protein Viewer:ENSP00000361195.1Re-query CCDS DB by Nucleotide ID:ENST00000372122Re-query CCDS DB by Protein ID:ENSP00000361195
Original member Current member NCBI NM_001377304.1 NP_001364233.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377304.1Link to Protein Sequence:NP_001364233.1Re-query CCDS DB by Nucleotide ID:NM_001377304Re-query CCDS DB by Protein ID:NP_001364233Link to BLAST:NP_001364233.1
Original member Current member NCBI NM_004188.8 NP_004179.3 Accepted alive Link to Nucleotide Sequence:NM_004188.8Link to Protein Sequence:NP_004179.3Re-query CCDS DB by Nucleotide ID:NM_004188Re-query CCDS DB by Protein ID:NP_004179Link to BLAST:NP_004179.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364233.1 330 Q5VTD9-1 330 100% 0 0
NP_004179.3 330 Q5VTD9-1 330 100% 0 0

Chromosomal Locations for CCDS 6957.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132986679 132986778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132987282 132987419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132988197 132988468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132989061 132989198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132989742 132989907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132990872 132991050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATG
AACCGCTCTGGCCTCCTGCCCTTACCCCGGTGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAG
CACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAG
AACTTGGCCAGGATGGCCCCGGCACCAGAGGGCCCCATTGTGCTGTCCCGACCCCAGGATGGGGACTCTC
CACTGTCCGACTCACCCCCATTCTACAAGCCTAGCTTCTCCTGGGACACCTTGGCCACAACCTATGGCCA
CAGCTACCGGCAGGCCCCCTCCACCATGCAGTCAGCCTTCCTGGAGCACTCCGTCAGCCTGTACGGCAGT
CCTCTTGTGCCCAGCACTGAGCCCGCCTTGGACTTCAGCCTCCGCTACTCCCCAGGCATGGATGCGTACC
ACTGTGTGAAGTGCAACAAGGTCTTCTCCACCCCTCACGGGCTCGAAGTGCATGTGCGACGCTCCCATAG
TGGGACCCGGCCCTTCGCCTGTGACATCTGCGGCAAAACCTTCGGCCACGCTGTGAGCCTGGAGCAGCAC
ACGCACGTCCACTCCCAGGAGCGCAGCTTCGAGTGCCGCATGTGCGGCAAGGCCTTCAAGCGCTCGTCCA
CGCTGTCCACCCACCTGCTCATCCACTCAGACACGCGGCCCTACCCCTGCCAGTTCTGCGGCAAGCGTTT
CCACCAGAAGTCCGACATGAAGAAGCACACCTACATCCACACAGGTGAGAAGCCGCACAAGTGCCAGGTG
TGCGGAAAGGCCTTCAGCCAGAGCTCCAACCTCATCACCCACAGCCGCAAGCACACAGGCTTCAAGCCCT
TCAGCTGTGAGCTGTGCACCAAAGGCTTCCAGCGCAAGGTGGACCTGCGGCGGCACCGCGAGAGCCAGCA
CAATCTCAAGTGA

Translation (330 aa):
MPRSFLVKSKKAHTYHQPRVQEDEPLWPPALTPVPRDQAPSNSPVLSTLFPNQCLDWTNLKREPELEQDQ
NLARMAPAPEGPIVLSRPQDGDSPLSDSPPFYKPSFSWDTLATTYGHSYRQAPSTMQSAFLEHSVSLYGS
PLVPSTEPALDFSLRYSPGMDAYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDICGKTFGHAVSLEQH
THVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQV
CGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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