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Report for CCDS68211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68211.1 Public Homo sapiens 21 PKNOX1 24 110 108 CCDS HistoryNCBI Gene:5316Re-query CCDS DB by CCDS ID:68211.1Re-query CCDS DB by GeneID:5316See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 68211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432907.6 ENSP00000402243.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432907.6Link to Ensembl Protein Viewer:ENSP00000402243.2Re-query CCDS DB by Nucleotide ID:ENST00000432907Re-query CCDS DB by Protein ID:ENSP00000402243
Original member Current member NCBI NM_001286258.2 NP_001273187.1 Accepted alive Link to Nucleotide Sequence:NM_001286258.2Link to Protein Sequence:NP_001273187.1Re-query CCDS DB by Nucleotide ID:NM_001286258Re-query CCDS DB by Protein ID:NP_001273187Link to BLAST:NP_001273187.1

Chromosomal Locations for CCDS 68211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43013068 43013238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43016908 43017007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43018133 43018230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43021303 43021431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43024871 43024947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43028702 43028874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43029890 43030101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGTAAAAGCAATCCAGGTTTTGCGCATTCATCTTCTTGAGCTGGAAAAGGTTAACGAACTCTGCAAAG
ATTTCTGCAGTCGATACATTGCTTGTCTGAAAACAAAAATGAACAGTGAAACTCTGTTGAGTGGAGAGCC
TGGAAGCCCGTACTCACCAGTGCAGTCCCAGCAGATTCAAAGTGCCATCACAGGCACCATCAGCCCTCAG
GGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAGGGAAACGTAGCCATGGCGACGGTGGCAGGTGGCACAG
TGTATCAGCCTGTCACGGTCGTCACTCCCCAAGGCCAAGTGGTCACACAGACATTGTCGCCTGGGACAAT
TAGGATCCAGAACTCCCAGCTTCAGTTACAGTTAAACCAAGATCTCAGCATCTTGCATCAAGATGATGGT
TCATCTAAGAACAAGAGGGGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTGGCTCTTCCAGC
ACATCGGGCATCCCTACCCAACAGAGGATGAGAAAAAACAGATTGCTGCTCAGACAAATTTGACACTACT
CCAAGTCAACAACTGGTTCATCAATGCCAGAAGACGAATTCTTCAGCCAATGTTGGATTCAAGTTGTTCA
GAGACCCCCAAAACAAAGAAAAAAACTGCTCAGAACCGGCCAGTTCAGAGGTTTTGGCCTGATTCTATTG
CATCAGGAGTCGCACAGCCACCGCCGAGCGAGCTCACCATGTCGGAAGGAGCTGTTGTCACCATCACCAC
GCCCGTGAACATGAACGTGGACAGCCTTCAGTCTCTGTCCTCGGACGGGGCCACCCTGGCGGTGCAGCAG
GTCATGATGGCAGGGCAGAGCGAGGACGAGTCTGTGGACAGCACAGAGGAGGATGCGGGTGCCCTGGCCC
CTGCCCACATCAGCGGGCTGGTCTTGGAGAACAGTGACTCCCTGCAGTAG

Translation (319 aa):
MVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTISPQ
GIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDG
SSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCS
ETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQ
VMMAGQSEDESVDSTEEDAGALAPAHISGLVLENSDSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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