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Report for CCDS6534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6534.1 Public Homo sapiens 9 SMU1 24 110 108 CCDS HistoryNCBI Gene:55234Re-query CCDS DB by CCDS ID:6534.1Re-query CCDS DB by GeneID:55234See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397149.4 ENSP00000380336.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397149.4Link to Ensembl Protein Viewer:ENSP00000380336.3Re-query CCDS DB by Nucleotide ID:ENST00000397149Re-query CCDS DB by Protein ID:ENSP00000380336
Original member Current member NCBI NM_018225.3 NP_060695.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018225.3Link to Protein Sequence:NP_060695.2Re-query CCDS DB by Nucleotide ID:NM_018225Re-query CCDS DB by Protein ID:NP_060695Link to BLAST:NP_060695.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060695.2 513 Q2TAY7-1 513 100% 0 0

Chromosomal Locations for CCDS 6534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 33047293 33047391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33048106 33048258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33053123 33053290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33056113 33056239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33056837 33056964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33057598 33057714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33060465 33060584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33062049 33062177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33068824 33068934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33071740 33071892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33073596 33073806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33076583 33076608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGTCGATCGAAATCGAATCTTCGGATGTGATCCGCCTTATTATGCAGTACTTGAAGGAGAACAGTTTAC
ATCGGGCGTTAGCCACCTTGCAGGAGGAGACTACTGTGTCTCTGAATACTGTGGACAGCATTGAGAGTTT
TGTGGCTGACATTAACAGTGGCCATTGGGATACTGTGTTGCAGGCTATACAGTCTCTGAAATTGCCAGAC
AAAACCCTCATTGACCTCTATGAACAGGTTGTTCTGGAATTGATAGAGCTCCGTGAATTGGGTGCTGCCA
GGTCACTTTTGAGACAGACTGATCCCATGATCATGTTAAAACAAACACAGCCAGAGCGATATATTCATCT
GGAGAACCTTTTGGCCAGGTCTTACTTTGATCCTCGTGAGGCATACCCAGATGGAAGTAGCAAAGAAAAG
AGAAGAGCAGCAATTGCCCAGGCCTTAGCTGGCGAAGTCAGTGTGGTGCCTCCATCTCGTCTCATGGCAT
TGCTGGGACAGGCACTGAAGTGGCAGCAGCATCAGGGATTGCTTCCTCCTGGTATGACCATAGATTTGTT
TCGAGGCAAGGCAGCTGTCAAAGATGTGGAAGAAGAAAAGTTTCCTACACAACTGAGCAGGCATATTAAG
TTTGGTCAGAAATCACATGTGGAGTGTGCTCGATTTTCTCCAGATGGTCAGTATTTGGTCACTGGGTCTG
TTGATGGATTCATTGAAGTATGGAACTTTACTACTGGAAAAATCAGAAAGGATCTTAAGTACCAGGCCCA
AGATAACTTTATGATGATGGATGATGCTGTCCTCTGCATGTGTTTCAGCAGAGATACAGAAATGTTAGCA
ACTGGGGCCCAAGATGGAAAAATCAAGGTGTGGAAGATTCAGAGTGGACAATGTTTAAGGAGATTTGAGA
GGGCACACAGTAAGGGTGTCACCTGTCTAAGCTTTTCTAAGGATAGCAGTCAGATCCTTAGTGCTTCTTT
TGACCAGACAATTAGAATTCATGGTTTAAAATCTGGGAAAACCCTGAAGGAATTTCGTGGCCATTCCTCC
TTTGTTAACGAAGCAACATTTACACAAGATGGACATTACATTATTAGTGCATCCTCTGATGGCACTGTAA
AGATCTGGAATATGAAGACCACAGAATGTTCAAATACCTTTAAATCCCTGGGCAGCACCGCAGGGACAGA
TATTACCGTCAACAGTGTGATTCTACTTCCTAAAAACCCTGAGCACTTTGTGGTGTGCAACAGATCAAAC
ACGGTGGTCATCATGAACATGCAGGGGCAGATTGTCAGAAGCTTCAGTTCTGGTAAAAGAGAAGGTGGGG
ACTTTGTTTGCTGTGCCCTCTCTCCCCGTGGTGAATGGATCTACTGTGTAGGGGAGGACTTTGTGCTCTA
CTGTTTCAGTACAGTCACTGGCAAACTGGAGAGAACTTTGACAGTGCACGAGAAGGATGTGATTGGTATT
GCACATCACCCTCATCAGAACCTGATTGCTACCTACAGTGAAGATGGACTCCTAAAGCTCTGGAAACCAT
AA

Translation (513 aa):
MSIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPD
KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK
RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK
FGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLA
TGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSS
FVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGI
AHHPHQNLIATYSEDGLLKLWKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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