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Report for CCDS5929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5929.1 Public Homo sapiens 7 GALNTL5 24 110 108 CCDS HistoryNCBI Gene:168391Re-query CCDS DB by CCDS ID:5929.1Re-query CCDS DB by GeneID:168391See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392800.7 ENSP00000376548.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392800.7Link to Ensembl Protein Viewer:ENSP00000376548.2Re-query CCDS DB by Nucleotide ID:ENST00000392800Re-query CCDS DB by Protein ID:ENSP00000376548
Original member Current member EBI ENST00000431418.6 ENSP00000392582.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431418.6Link to Ensembl Protein Viewer:ENSP00000392582.2Re-query CCDS DB by Nucleotide ID:ENST00000431418Re-query CCDS DB by Protein ID:ENSP00000392582
Original member Current member EBI ENST00000616416.4 ENSP00000479207.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616416.4Link to Ensembl Protein Viewer:ENSP00000479207.1Re-query CCDS DB by Nucleotide ID:ENST00000616416Re-query CCDS DB by Protein ID:ENSP00000479207
Original member Current member NCBI NM_145292.4 NP_660335.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145292.4Link to Protein Sequence:NP_660335.2Re-query CCDS DB by Nucleotide ID:NM_145292Re-query CCDS DB by Protein ID:NP_660335Link to BLAST:NP_660335.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660335.2 443 Q7Z4T8-1 443 100% 0 0

Chromosomal Locations for CCDS 5929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151967247 151967493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151970945 151971065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151982986 151983152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151987159 151987281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152002714 152002963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152007827 152007944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152014644 152014793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152019646 152019801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGAGAAATGCCATAATTCAAGGTTTATTCTATGGGTCCTTGACATTTGGGATCTGGACAGCTCTGTTAT
TCATATATTTGCACCATAATCATGTGAGCAGCTGGCAGAAGAAAAGCCAGGAGCCTCTGTCAGCTTGGTC
CCCTGGAAAAAAAGTGCATCAGCAAATTATCTATGGCTCAGAGCAAATACCAAAACCTCATGTAATAGTC
AAAAGGACTGATGAAGATAAAGCAAAGTCTATGTTAGGTACAGATTTTAACCATACAAACCCAGAACTTC
ATAAAGAACTTTTAAAATATGGATTTAATGTGATTATCAGTAGAAGCTTGGGCATCGAAAGAGAAGTGCC
AGATACCAGGAGTAAAATGTGTCTTCAAAAACATTACCCAGCCCGCCTCCCGACTGCCAGCATTGTCATT
TGCTTCTATAATGAAGAATGTAATGCCTTGTTTCAGACCATGTCCAGTGTCACGAACCTCACGCCACACT
ATTTTCTTGAAGAAATTATTTTGGTAGATGACATGAGCAAAGTTGATGATTTGAAAGAAAAACTAGACTA
TCACCTGGAAACTTTTCGGGGAAAGGTTAAAATAATAAGAAACAAAAAGAGAGAGGGGCTGATTCGAGCA
AGGCTGATTGGAGCTTCTCATGCTTCAGGGGATGTTCTGGTGTTCCTGGACAGCCACTGTGAGGTGAACA
GAGTATGGCTGGAGCCCCTGCTGCATGCCATTGCCAAGGACCCCAAAATGGTGGTGTGCCCCCTGATAGA
TGTCATTGATGATAGAACTCTGGAGTATAAGCCCTCTCCTCTTGTAAGGGGAACTTTTGATTGGAACCTA
CAATTTAAATGGGATAATGTTTTCTCTTATGAGATGGATGGACCAGAAGGATCTACTAAACCAATCCGGT
CACCTGCAATGTCTGGAGGAATTTTTGCTATACGTCGGCATTATTTTAATGAAATTGGACAGTATGACAA
GGATATGGATTTTTGGGGAAGAGAAAATTTGGAACTTTCACTAAGGATCTGGATGTGTGGAGGCCAACTC
TTTATAATCCCCTGCTCTCGAGTAGGACATATCAGTAAGAAACAAACTGGAAAACCTTCTACAATCATCA
GTGCTATGACACATAACTACCTAAGACTGGTGCACGTTTGGCTGGATGAATATAAGGAGCAGTTTTTTCT
TCGAAAGCCTGGTCTGAAATATGTCACCTACGGAAATATTCGCGAGCGTGTTGAGTTAAGGAAACGACTG
GGTTGCAAGTCATTTCAGTGGTATTTGGATAATGTCTTCCCAGAGTTGGAGGCATCTGTGAACAGCCTGT
GA

Translation (443 aa):
MRNAIIQGLFYGSLTFGIWTALLFIYLHHNHVSSWQKKSQEPLSAWSPGKKVHQQIIYGSEQIPKPHVIV
KRTDEDKAKSMLGTDFNHTNPELHKELLKYGFNVIISRSLGIEREVPDTRSKMCLQKHYPARLPTASIVI
CFYNEECNALFQTMSSVTNLTPHYFLEEIILVDDMSKVDDLKEKLDYHLETFRGKVKIIRNKKREGLIRA
RLIGASHASGDVLVFLDSHCEVNRVWLEPLLHAIAKDPKMVVCPLIDVIDDRTLEYKPSPLVRGTFDWNL
QFKWDNVFSYEMDGPEGSTKPIRSPAMSGGIFAIRRHYFNEIGQYDKDMDFWGRENLELSLRIWMCGGQL
FIIPCSRVGHISKKQTGKPSTIISAMTHNYLRLVHVWLDEYKEQFFLRKPGLKYVTYGNIRERVELRKRL
GCKSFQWYLDNVFPELEASVNSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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