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Report for CCDS57982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57982.1 Public Homo sapiens 1 RCAN3 24 110 108 CCDS HistoryNCBI Gene:11123Re-query CCDS DB by CCDS ID:57982.1Re-query CCDS DB by GeneID:11123See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57982.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374393.4 ENSP00000363514.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374393.4Link to Ensembl Protein Viewer:ENSP00000363514.2Re-query CCDS DB by Nucleotide ID:ENST00000374393Re-query CCDS DB by Protein ID:ENSP00000363514
Original member Current member NCBI NM_001251985.1 NP_001238914.1 Accepted alive Link to Nucleotide Sequence:NM_001251985.1Link to Protein Sequence:NP_001238914.1Re-query CCDS DB by Nucleotide ID:NM_001251985Re-query CCDS DB by Protein ID:NP_001238914Link to BLAST:NP_001238914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238914.1 115 Q9UKA8-4 115 100% 0 0

Chromosomal Locations for CCDS 57982.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24514373 24514567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24535093 24535245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCTGAGGGACACTATGAAATCTTGGAATGATAGCCAGTCAGATCTGTGTAGCACTGACCAAGAAGAGG
AAGAAGAGATGATTTTTGGTGAAAATGAAGATGATTTGGATGAGATGATGGATTTAAGTGATCTGCCTAC
CTCACTTTTTGCTTGCAGCGTCCATGAAGCAGTGTTTGAGGCACGAGAGCAGAAGGAGAGAAATATGAAC
TTCACGCGGGAACAGAGTCGACACCCAGCGTGGTGGTTCATGTCTGTGAAAGTGAAACTGAAGAGGAAGA
AGAGACAAAAAACCCCAAACAGAAAATTGCCCAGACGAGGCGCCCCGACCCTCCGACCGCAGCGTTGA

Translation (115 aa):
MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTSLFACSVHEAVFEAREQKERNMN
FTREQSRHPAWWFMSVKVKLKRKKRQKTPNRKLPRRGAPTLRPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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