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Report for CCDS57979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57979.1 Public Homo sapiens 1 RCAN3 24 110 108 CCDS HistoryNCBI Gene:11123Re-query CCDS DB by CCDS ID:57979.1Re-query CCDS DB by GeneID:11123See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425530.3 ENSP00000409540.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425530.3Link to Ensembl Protein Viewer:ENSP00000409540.2Re-query CCDS DB by Nucleotide ID:ENST00000425530Re-query CCDS DB by Protein ID:ENSP00000409540
Original member Current member NCBI NM_001251980.1 NP_001238909.1 Accepted alive Link to Nucleotide Sequence:NM_001251980.1Link to Protein Sequence:NP_001238909.1Re-query CCDS DB by Nucleotide ID:NM_001251980Re-query CCDS DB by Protein ID:NP_001238909Link to BLAST:NP_001238909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238909.1 231 Q9UKA8-2 231 100% 0 0

Chromosomal Locations for CCDS 57979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24514373 24514567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24531218 24531391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24533113 24533254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24535093 24535277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGCTGAGGGACACTATGAAATCTTGGAATGATAGCCAGTCAGATCTGTGTAGCACTGACCAAGAAGAGG
AAGAAGAGATGATTTTTGGTGAAAATGAAGATGATTTGGATGAGATGATGGATTTAAGTGATCTGCCTAC
CTCACTTTTTGCTTGCAGCGTCCATGAAGCAGTGTTTGAGGCACGAGAGCAGAAGGAAAGATTTGAAGCA
CTCTTCACCATCTATGATGACCAGGTTACTTTTCAGCTGTTTAAAAGCTTTAGAAGAGTCAGAATAAATT
TCAGCAAACCTGAAGCGGCAGCAAGAGCGCGAATAGAACTCCACGAAACAGACTTCAATGGGCAGAAGCT
AAAGCTATATTTTGCACAGTCCTATCTCCTGCCGCCCCAGCCTGTCAAGCAGTTCCTCATCTCCCCTCCA
GCCTCTCCCCCGGTGGGGTGGAAGCAGAGCGAAGATGCGATGCCTGTTATAAATTATGATTTACTCTGTG
CTGTTTCCAAATTGGGACCAGGAGAGAAATATGAACTTCACGCGGGAACAGAGTCGACACCCAGCGTGGT
GGTTCATGTCTGTGAAAGTGAAACTGAAGAGGAAGAAGAGACAAAAAACCCCAAACAGAAAATTGCCCAG
ACGAGGCGCCCCGACCCTCCGACCGCAGCGTTGAATGAGCCCCAGACCTTTGATTGCGCGCTGTGA

Translation (231 aa):
MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTSLFACSVHEAVFEAREQKERFEA
LFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGQKLKLYFAQSYLLPPQPVKQFLISPP
ASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETKNPKQKIAQ
TRRPDPPTAALNEPQTFDCAL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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