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Report for CCDS57616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57616.1 Public Mus musculus 8 Dlc1 23 108 98 CCDS HistoryNCBI Gene:50768Re-query CCDS DB by CCDS ID:57616.1Re-query CCDS DB by GeneID:50768See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098826.9 ENSMUSP00000096425.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098826.9Link to Ensembl Protein Viewer:ENSMUSP00000096425.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098826Re-query CCDS DB by Protein ID:ENSMUSP00000096425
Original member Current member NCBI NM_001194941.1 NP_001181870.1 Accepted alive Link to Nucleotide Sequence:NM_001194941.1Link to Protein Sequence:NP_001181870.1Re-query CCDS DB by Nucleotide ID:NM_001194941Re-query CCDS DB by Protein ID:NP_001181870Link to BLAST:NP_001181870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181870.1 1126 Q9R0Z9-2 1126 99.7336% 0 3

Chromosomal Locations for CCDS 57616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 36570283 36570403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36571265 36571438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36572668 36572885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36573955 36574173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36574807 36574921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36577035 36577248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36579224 36579422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36579547 36579706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36582701 36582877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36583541 36584967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36586676 36586739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36593377 36593458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36599369 36599440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36732588 36732726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3381 nt):
ATGGGGGACCCCGAGGGCCACGTGATGGCTCGGCCCCTGAGAGGCCCGCTGCGGAGGTCCTTCAGCGACC
ACATCAGAGACTCCACCGCCAGGGCGCTGGATGCTATCTGGAAAAACACCAGAGAGAGACGGCTAGCAGA
AATTGAAGCCAAGGAAGCTTGCGACTGGCTGAGAGTGACTGGTTTCCCCCAGTATGCACAGCTGTATGAA
GATCTACTGTTCCCTATTGATATTGCGCTGGTCAAGAGAGAACATGACTTCTTGGACAGAGACGCCATCG
AGGCTCTCTGCAGGCGCTTAAATACTCTAAACAAGTGTGCAGTCATGAAGCTGGAGATCAGTCCTCACCG
GAAGCGAAGTGAGGATTCGGATGAAGATGAGCCTTGCGCCATAAGCGGCAAGTGGACTTTCCAGAGGGAC
AGCAAGCGGTGGTCCCGCCTTGAAGAGTTTGACGTCTTTTCCCCAAAGCAGGATCCAATCCCTGGGTCCC
CAGACAACTCTCGTTTGCAAAGCGCCACAAGCCACGAAAGCATGCTGACAGACCTCAGCGAGCACCAGGA
GGTGGCCTCTGTCCGAAGCCTCAGCAGCACCAGCAGCAGCGTCCCCACCCACGCAGCCCACAGTGGAGAT
GCCACTACGCCCCGAACCAATTCCGTCATCAGCGTCTGCTCCTCCGGACACTTTGTAGGCAATGATGACT
CTTTTTCCAGCCTGCCGTCTCCCAAGGAACTGTCCAGCTTCAGTTTTAGCATGAAAGGCCACCACGAGAA
GAACACCAAGTCGAAGACGCGGAGCCTGCTCAAACGCATGGAGAGCCTGAAGCTCAAGGGCTCCCACCAC
AGCAAGCACAAGGCGCCTTCCAAGCTGGGGTTGATCATCAGTGCTCCCATTCTGCAGGAGGGTATGGATG
AGGCAAAGCTGAAGCAGCTGAACTGTGTGGAGATCTCAGCCCTCAATGGCAACCACATCAACGTGCCCAT
GGTACGGAAAAGGAGCGTGTCTAACTCCACCCAGACCAGCAGCAGCAGCAGCCAATCAGAGACCAGCAGC
GCGGTCAGCACACCCAGCCCGGTCACCAGGACCCGGAGCCTCAGCACCTGTAACAAGCGGGTGGGCATGT
ATCTAGAGGGCTTCGACCCATTCAGTCAGTCCACCTTGAACAACGTGACGGAGCAGAACTATAAAAACCG
TGAGAGCTACCCAGAGGACACGGTGTTCTACATTCCCGAAGATCACAAGCCCGGCACCTTCCCTAAGGCC
CTCTCCCATGGCAGTTTCTGTCCCTCGGGAAACAGTTCTGTGAACTGGAGGACCGGAAGCTTCCATGGCC
CTGGCCATCTCAGCCTACGGAGAGAAAACAGCCATGACAGTCCTAAGGAGCTGAAGAGACGCAATTCTTC
CAGCTCTCTGAGCAGCCGCCTGAGCATCTATGATAACGTACCGGGTTCTATCCTGTACTCCAGCTCGGGA
GAACTGGCCGACCTGGAGAATGAGGACATCTTCCCTGAGCTGGATGACATTCTCTACCACGTGAAGGGGA
TGCAGCGGATAGTCAACCAGTGGTCCGAGAAGTTTTCCGACGAGGGAGACTCGGACTCAGCCCTGGACTC
TGTCTCTCCTTGCCCGTCATCTCCAAAACAGATACACCTGGATGTGGACCATGACCGAAGGACACCCAGT
GACCTGGACAGCACAGGCAACTCCCTCAATGAGCCCGAAGAGCCCACTGATATCCCGGAAAGAAGAGACT
CAGGGGTGGGGGCTTCCCTGACCAGGTGCAATAGGCACAGACTGAGGTGGCACAGCTTCCAGAGCTCCCA
CCGGCCGAGCCTCAACTCCGTGTCACTGCAGATTAACTGCCAGTCTGTGGCCCAGATGAACCTGCTGCAG
AAATACTCGCTCCTGAAATTGACGGCCCTGCTGGAAAAGTACACGCCTTCCAACAAGCACGGCTTCAGCT
GGGCTGTGCCCAAGTTCATGAAAAGGATCAAGGTTCCAGACTACAAGGACCGGAGTGTGTTTGGGGTCCC
ACTGACTGTGAACGTGCAGCGCTCAGGACAGCCCCTGCCCCAGAGCATCCAGCAGGCCATGCGCTACCTC
CGTAACCACTGTCTGGACCAGGTCGGGCTCTTCAGGAAGTCAGGTGTCAAATCCCGGATCCAGGCTCTAC
GCCAGATGAATGAAAGCGCTGAAGATAATGTCAACTATGAAGGCCAGTCTGCTTATGATGTGGCAGACAT
GTTAAAGCAATATTTTCGAGATCTTCCTGAGCCCCTCATGACGAACAAACTCTCCGAAACCTTCCTGCAG
ATCTACCAGTATGTTCCCAAGGACCAGCGCCTCCAAGCCATCAAGGCGGCCATTATGCTCCTGCCCGACG
AGAACCGGGAGGTTCTGCAGACACTTCTCTATTTCCTGAGCGATGTCACAGCGGCTGTGAAAGAAAACCA
GATGACTCCCACCAACCTGGCTGTGTGCCTAGCTCCGTCCCTCTTCCACCTCAACACCCTGAAGCGAGAG
AATTCTTCTCCAAGGGTAATGCAAAGAAAACAGAGTTTGGGCAAACCAGACCAGAAAGACCTGAATGAAA
ACCTAGCGGCGACTCAAGGGCTGGCCCACATGATTGCTGAGTGCAAGAAGCTCTTCCAGGTCCCTGAGGA
AATGAGCCGGTGCCGTAACTCCTACACTGAACAAGAGCTGAAGCCCCTTACCCTGGAGGCCTTGGGACAC
CTGAATAGTGACCAGCCTGCTGACTACAGACACTTCCTCCAGGACTGTGTGGATGGCCTGTTTAAGGAGG
TCAAAGAGAAGTTCAAAGGCTGGGTCAGCTACCCCACCTCCGAACAGGCTGAGCTGTCCTATAAGAAGGT
CAGCGAAGGACCCCCGTTAAGGCTTTGGAGGTCAACTATCGAAGTCCCCGCTGCACCCGAGGAGATCTTA
AAGCGCCTTCTGAAGGAGCAACACCTCTGGGATGTGGACCTGCTGGACTCCAAGGTGATTGAAATCCTGG
ACAGCCAGACTGAAATCTACCAATACGTCCAAAACAGCATGGCGCCCCACCCTGCGCGGGACTACGTCGT
ATTGAGGACCTGGAGGACTAACTTACCCAGGGGGGCCTGTGCTCTCTTACTCACCTCTGTGGATCACGAC
CGGGCCCCCGTGGCGGGGGTGAGGGTTAATGTGCTCCTGTCCAGATATTTGATTGAACCCTGCGGGTCAG
GAAAATCCAAGCTTACCTACATGTGCAGAGCTGATTTAAGGGGCCACATGCCGGAGTGGTACTCAAAATC
TTTTGGACATTTGTGTGCAGCCGAAGTGGTAAAGATCCGAGACTCCTTCAGTAATCAGAACACTGAAAGC
AAGGACACGAGATCTAGGTGA

Translation (1126 aa):
MGDPEGHVMARPLRGPLRRSFSDHIRDSTARALDAIWKNTRERRLAEIEAKEACDWLRVTGFPQYAQLYE
DLLFPIDIALVKREHDFLDRDAIEALCRRLNTLNKCAVMKLEISPHRKRSEDSDEDEPCAISGKWTFQRD
SKRWSRLEEFDVFSPKQDPIPGSPDNSRLQSATSHESMLTDLSEHQEVASVRSLSSTSSSVPTHAAHSGD
ATTPRTNSVISVCSSGHFVGNDDSFSSLPSPKELSSFSFSMKGHHEKNTKSKTRSLLKRMESLKLKGSHH
SKHKAPSKLGLIISAPILQEGMDEAKLKQLNCVEISALNGNHINVPMVRKRSVSNSTQTSSSSSQSETSS
AVSTPSPVTRTRSLSTCNKRVGMYLEGFDPFSQSTLNNVTEQNYKNRESYPEDTVFYIPEDHKPGTFPKA
LSHGSFCPSGNSSVNWRTGSFHGPGHLSLRRENSHDSPKELKRRNSSSSLSSRLSIYDNVPGSILYSSSG
ELADLENEDIFPELDDILYHVKGMQRIVNQWSEKFSDEGDSDSALDSVSPCPSSPKQIHLDVDHDRRTPS
DLDSTGNSLNEPEEPTDIPERRDSGVGASLTRCNRHRLRWHSFQSSHRPSLNSVSLQINCQSVAQMNLLQ
KYSLLKLTALLEKYTPSNKHGFSWAVPKFMKRIKVPDYKDRSVFGVPLTVNVQRSGQPLPQSIQQAMRYL
RNHCLDQVGLFRKSGVKSRIQALRQMNESAEDNVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQ
IYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRE
NSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKLFQVPEEMSRCRNSYTEQELKPLTLEALGH
LNSDQPADYRHFLQDCVDGLFKEVKEKFKGWVSYPTSEQAELSYKKVSEGPPLRLWRSTIEVPAAPEEIL
KRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPRGACALLLTSVDHD
RAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRADLRGHMPEWYSKSFGHLCAAEVVKIRDSFSNQNTES
KDTRSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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