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Report for CCDS57323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57323.1 Public Mus musculus 4 Samd11 23 108 98 CCDS HistoryNCBI Gene:231004Re-query CCDS DB by CCDS ID:57323.1Re-query CCDS DB by GeneID:231004See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179919.2 ENSMUSP00000136611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179919.2Link to Ensembl Protein Viewer:ENSMUSP00000136611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179919Re-query CCDS DB by Protein ID:ENSMUSP00000136611
Original member Current member NCBI NM_001110516.2 NP_001103986.1 Accepted alive Link to Nucleotide Sequence:NM_001110516.2Link to Protein Sequence:NP_001103986.1Re-query CCDS DB by Nucleotide ID:NM_001110516Re-query CCDS DB by Protein ID:NP_001103986Link to BLAST:NP_001103986.1

Chromosomal Locations for CCDS 57323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156247724 156247969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248088 156248198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248337 156248458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248620 156249122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156249195 156249273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156249385 156249500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156250338 156250500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156251946 156252080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156252197 156252313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156254456 156254522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCCTGAGCATCCAAGACACTGTGACTTCCAGAGAGGCAACGTGGAGATCGGCCTTGGACCTGGAGGCG
ACCTGTTGGGCAAGAGGCTGAGCTGCCCCTGCATCACCAGTCACTGCTCTTCAGAGAAGAAGGCCAGAAG
CAAGGACCCCCAAGGTGAAAGCCCGACTCTGGAAAAGGATGCAGCGACTTCGCTGCTTCCCGAGCTAGAG
TCTACAATGGCCCCCGAGGACCACTACCATCAGCTTATGTCGGCCCTGAGTGAGGCCAGCTCCTTTGAGG
AAACTCAACGTCTCTACCACTTGGGTATCCCCAGCCACGATCTGCTTAGGGTACGCCAGGAAGTAGCAAC
TGCAACACTGAGGGGTCCCAGTGGCTTGGAAGTTCACCTGCCCTCGTCTACAGCAGACCATCGACGGAAG
CAAGGCCTAGTTCAGCGCCGGGAAGGGGCGGTTCCAGCTGCTGCCACATCTTTCTCTGAAAGGGAAATGT
CACAGCCACCCCCTTTGCTGTCACCCCAGAATGCCGCCCACATCACAATGAGCTCCCATCTCCGGCCTCC
TTTTCTGGGGATGCCCACAGCTGTGTGTCAGACCCCAGGTTTCAGCTTCCTACCCTCCGCCCAGGCTGAG
ATGTTAGCTCGGCAGCAGGAACTTCTACGGAAGCAGAGCCTGGCTCGGCTGGAAATGTCAGAGTTGCTTA
GGCAGAAAGAACTGGGCAGTGTTCACCGGCCACTGCTACCGGCACCAGAGGTGGCCTTGCATATCCCCGA
GGGTCCCGACGAACTGCAGCGACGTGGCTCCATGCTGGTTTTGAAACACAGCTCAGCACCACTACTGGCC
CTGCCACCCCAGGGACCCCCAGGCCCAGGACCCCCTATCCCACCCAAGGAGTCTGCTCGAAGCCGGTCCG
AAAAGGGGAGCCTTGGTGTCCAGCCCAGCCAACCCAAGGAGACGACAGGGGCTGGCCTCTGGGCTCAAGA
AGTCTCTGAGGAGCCATCCAAGGACTCAGATGGAGAGGACCCCGAGACAGCAGCTGCCAGGGAAGGGACC
TCCACTCCCAGCCAAGTCCCAGCAGGAGGGACCAGAGCAGAAGGAAGGGGGCTTCTATCAGGGTCCACAC
TGCCCCCTCCACTGCCCCTGGGATTCCCTTGCGGGGCAGTGAGCCCCTACTTCCACACAGGTACCATGGG
GGGGCTCTTCACTGATGAGGAGACCACAACCCTTGAGGATGTCAACAAGTGGACTGTAGATGATGTCTGC
AACTTCGTGGGGGGCCTTTCTGGCTGTGGCGAGTATGCCAGGGTATTCGGAGAACAAGGAATAGACGGAG
AGACTTTGCCTCTACTGACAGAAGAGCACCTTCTGAACACCATGGGACTGAAGCTAGGGCCTGCCCTCAA
GATCAGGGCACAAGTGGCCAAGCGCCTGGGCCGTGTCTTCTACATGGCCAGCTTCCCTGTGGCCCTGCCG
CTGCAGCCACCAAGCCTGCAAGCACCTGAGCTCAGCCCAGGACATCAACCTCTGTCGCCAGCAACCACCA
CCTCCCCGTATGAAGGGACCCACCTGCCCACAGGACAAGCCTCACCCAAGCAGGAGAATGGGTCAGGGAC
CATAGCTCTGCTTTCAGGTGCCCCAGACCCTTCCCAGCTTCTCCAATGA

Translation (552 aa):
MPEHPRHCDFQRGNVEIGLGPGGDLLGKRLSCPCITSHCSSEKKARSKDPQGESPTLEKDAATSLLPELE
STMAPEDHYHQLMSALSEASSFEETQRLYHLGIPSHDLLRVRQEVATATLRGPSGLEVHLPSSTADHRRK
QGLVQRREGAVPAAATSFSEREMSQPPPLLSPQNAAHITMSSHLRPPFLGMPTAVCQTPGFSFLPSAQAE
MLARQQELLRKQSLARLEMSELLRQKELGSVHRPLLPAPEVALHIPEGPDELQRRGSMLVLKHSSAPLLA
LPPQGPPGPGPPIPPKESARSRSEKGSLGVQPSQPKETTGAGLWAQEVSEEPSKDSDGEDPETAAAREGT
STPSQVPAGGTRAEGRGLLSGSTLPPPLPLGFPCGAVSPYFHTGTMGGLFTDEETTTLEDVNKWTVDDVC
NFVGGLSGCGEYARVFGEQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALP
LQPPSLQAPELSPGHQPLSPATTTSPYEGTHLPTGQASPKQENGSGTIALLSGAPDPSQLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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