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Report for CCDS57260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57260.1 Public Mus musculus 3 Ssx2ip 23 108 98 CCDS HistoryNCBI Gene:99167Re-query CCDS DB by CCDS ID:57260.1Re-query CCDS DB by GeneID:99167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039021.10 ENSMUSP00000045663.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039021.10Link to Ensembl Protein Viewer:ENSMUSP00000045663.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039021Re-query CCDS DB by Protein ID:ENSMUSP00000045663
Original member Current member EBI ENSMUST00000106149.7 ENSMUSP00000101755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106149.7Link to Ensembl Protein Viewer:ENSMUSP00000101755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106149Re-query CCDS DB by Protein ID:ENSMUSP00000101755
Original member Current member EBI ENSMUST00000106151.7 ENSMUSP00000101757.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106151.7Link to Ensembl Protein Viewer:ENSMUSP00000101757.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106151Re-query CCDS DB by Protein ID:ENSMUSP00000101757
Original member Current member NCBI NM_001253768.2 NP_001240697.1 Accepted alive Link to Nucleotide Sequence:NM_001253768.2Link to Protein Sequence:NP_001240697.1Re-query CCDS DB by Nucleotide ID:NM_001253768Re-query CCDS DB by Protein ID:NP_001240697Link to BLAST:NP_001240697.1
Original member Current member NCBI NM_001253769.2 NP_001240698.1 Accepted alive Link to Nucleotide Sequence:NM_001253769.2Link to Protein Sequence:NP_001240698.1Re-query CCDS DB by Nucleotide ID:NM_001253769Re-query CCDS DB by Protein ID:NP_001240698Link to BLAST:NP_001240698.1
Original member Current member NCBI NM_001253770.2 NP_001240699.1 Accepted alive Link to Nucleotide Sequence:NM_001253770.2Link to Protein Sequence:NP_001240699.1Re-query CCDS DB by Nucleotide ID:NM_001253770Re-query CCDS DB by Protein ID:NP_001240699Link to BLAST:NP_001240699.1

Chromosomal Locations for CCDS 57260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146417748 146417790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146418275 146418444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146419135 146419347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146422896 146423006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146426323 146426458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146427825 146427900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146427987 146428167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146430929 146431079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146432481 146432617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146432976 146433146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146436543 146436657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146437176 146437341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146438656 146438830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGGAGATTGGATGACTGTGACAGATCCAGTTCTGTGTACAGAAAACAAAAATCTCTCTCAATATACCT
CAGAAACAAAGATGTCTCCGTCCAGTTTGTACTCCCAGCAAGTTCTGTGCTCTTCAGTACCTTTATCCAA
AAACGTGCATGGTGTTTTCGGTGTCTTCTGCACAGGAGAGAACATTGAACAAAGTATTTCCTATCTTGAT
CAGGAGCTGACCACCTTCGGGTTTCCTTCCTTGTATGAAGAATCCAAAAGTAAAGAGGCAAAGAGAGAAT
TAAATATAGTCGCTGTTCTGAACTGTATGAACGAGCTGCTCGTGCTTCAGCGGAAGAACCTGCTGGCCCA
GGAGAGCGTGGAGACACAGAACTTGAAGCTGGGCAGTGACATGGACCACCTGCAGAGCTGCTACGCCAAA
CTTAAGGAGCAGTTGGAAACGTCCAGGCGGGAGATGATCGGGCTTCAAGAGAGAGACAGGCAGCTGCAGT
GCAAGAACAGGAGTTTGCATCAGCTCCTGAAGAATGAGAAAGATGAGGTACAAAAATTACAAAATATCAT
AGCCAGCCGGGCTACTCAGTATAATCATGATGTGAAGAGGAAGGAGCGTGAATATAATAAGCTAAAGGAG
CGCCTGCATCAGCTCGTTATGAACAAGAAGGATAAAAACATAGCCATGGATGTTTTAAATTATGTGGGTC
GAGCTGATGGCAAACGAGGCTCATGGAGGACTGACAAAACAGAAGCCAGGAATGAAGATGAGATGTACAA
AATTCTGTTGAATGATTATGAGTACCGCCAGAAGCAGATCCTGATGGAGAACGCGGAGCTGAAGAAGGTC
CTCCAGCAGATGAAGAAGGAGATGATCTCTCTCCTGTCTCCTCAGAAGAAGAAGCCCAGGGAAAGAGCAG
AGGACGGCACAGGCACTGTTGCTATCTCCGATATAGAAGATGACTCTGGGGAACTGAGCAGAGACAGCGT
GTGGGGCCTTTCCTGTGACACTGTGAGAGAGCAGCTGACAAACAGCATCAGGAAACAGTGGAGAATTTTG
AAAAGTCATGTAGAAAAACTCGATAACCAAGCTTCGAAGGTACACTCAGAGGGCCTTAATGAGGAGGACG
TCATCTCACGACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTGAGCGGTGTAAAGAGAT
GATCAAGGCTCAGCAGCAGCTCTTACAGCAGCTGGCCACCACGTGTGATGATGACACCACCTCACTGTTG
CGAGACTGTTACTTGCTGGAAGAAAAGGAACGCCTTAAAGAAGAGTGGACCCTTTTTAAAGAGCAAAAAA
AGAATTTTGAGAGAGAAAGGCGAAGCTTTACAGAAGCTGCCATTCGATTGGGGTTGGAGAGAAAGGCGTT
TGAAGAAGAGCGAGCCAGCTGGGTAAAGCAGCAGTTTTTAAACATGACGAACTTTGACCACCAGAACTCA
GAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAAGTTCTGATCCAGACAATCTTATAGTCCACTCACGGC
CACGGCAAAAGAAGCTACACAGTGTGGCTAATGGGGTGCCAGCTTGCACATCAAAACTGACTAAATCTCT
TCCTGCCTCACCTTCTACTTCAGACTTTCGCCAGACACATTCATGTGTGTCTGAACACAGTTCCATCAGT
GTGCTGAATATAACTCCTGAAGAAAGTAAACCAAGTGAGGTTGCAAGAGAAAGCACGGATCAGAAGTGGA
GCGTGCAGTCGAGGCCCAGCTCGCGGGAGGGGTGCTACAGCGGATGCTCCTCGGCCTTCAGGAGCGCTCA
CGGGGACCGAGATGACTTACCTTAA

Translation (614 aa):
MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSSVPLSKNVHGVFGVFCTGENIEQSISYLD
QELTTFGFPSLYEESKSKEAKRELNIVAVLNCMNELLVLQRKNLLAQESVETQNLKLGSDMDHLQSCYAK
LKEQLETSRREMIGLQERDRQLQCKNRSLHQLLKNEKDEVQKLQNIIASRATQYNHDVKRKEREYNKLKE
RLHQLVMNKKDKNIAMDVLNYVGRADGKRGSWRTDKTEARNEDEMYKILLNDYEYRQKQILMENAELKKV
LQQMKKEMISLLSPQKKKPRERAEDGTGTVAISDIEDDSGELSRDSVWGLSCDTVREQLTNSIRKQWRIL
KSHVEKLDNQASKVHSEGLNEEDVISRQDHEQETEKLELEIERCKEMIKAQQQLLQQLATTCDDDTTSLL
RDCYLLEEKERLKEEWTLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTNFDHQNS
ENVKLFSAFSGSSDPDNLIVHSRPRQKKLHSVANGVPACTSKLTKSLPASPSTSDFRQTHSCVSEHSSIS
VLNITPEESKPSEVARESTDQKWSVQSRPSSREGCYSGCSSAFRSAHGDRDDLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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