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Report for CCDS57096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57096.1 Public Mus musculus 17 Slc29a1 23 108 98 CCDS HistoryNCBI Gene:63959Re-query CCDS DB by CCDS ID:57096.1Re-query CCDS DB by GeneID:63959See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051574.12 ENSMUSP00000063096.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051574.12Link to Ensembl Protein Viewer:ENSMUSP00000063096.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051574Re-query CCDS DB by Protein ID:ENSMUSP00000063096
Original member Current member EBI ENSMUST00000097317.9 ENSMUSP00000094923.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097317.9Link to Ensembl Protein Viewer:ENSMUSP00000094923.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097317Re-query CCDS DB by Protein ID:ENSMUSP00000094923
Original member Current member EBI ENSMUST00000166119.7 ENSMUSP00000128763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166119.7Link to Ensembl Protein Viewer:ENSMUSP00000128763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166119Re-query CCDS DB by Protein ID:ENSMUSP00000128763
Original member Current member EBI ENSMUST00000167692.7 ENSMUSP00000131976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167692.7Link to Ensembl Protein Viewer:ENSMUSP00000131976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167692Re-query CCDS DB by Protein ID:ENSMUSP00000131976
Original member NCBI NM_001199113.1 NP_001186042.1 Updated not alive Link to Nucleotide Sequence:NM_001199113.1Link to Protein Sequence:NP_001186042.1Re-query CCDS DB by Nucleotide ID:NM_001199113Re-query CCDS DB by Protein ID:NP_001186042
Current member NCBI NM_001199113.2 NP_001186042.1 Accepted alive Link to Nucleotide Sequence:NM_001199113.2Link to Protein Sequence:NP_001186042.1Re-query CCDS DB by Nucleotide ID:NM_001199113Re-query CCDS DB by Protein ID:NP_001186042Link to BLAST:NP_001186042.1
Original member NCBI NM_001199114.1 NP_001186043.1 Updated not alive Link to Nucleotide Sequence:NM_001199114.1Link to Protein Sequence:NP_001186043.1Re-query CCDS DB by Nucleotide ID:NM_001199114Re-query CCDS DB by Protein ID:NP_001186043
Current member NCBI NM_001199114.2 NP_001186043.1 Accepted alive Link to Nucleotide Sequence:NM_001199114.2Link to Protein Sequence:NP_001186043.1Re-query CCDS DB by Nucleotide ID:NM_001199114Re-query CCDS DB by Protein ID:NP_001186043Link to BLAST:NP_001186043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186042.1 460 Q9JIM1-1 460 100% 0 0
NP_001186043.1 460 Q9JIM1-1 460 100% 0 0

Chromosomal Locations for CCDS 57096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45585671 45585782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45586094 45586305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45587228 45587313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45587562 45587670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45588289 45588386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45588996 45589074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589208 45589305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589414 45589548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589681 45589820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45589923 45590125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45590257 45590338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45592179 45592207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGACAACCAGTCACCAGCCTCAGGACAGGTATAAGGCAGTATGGCTTATCTTCTTTGTGCTGGGCCTGG
GGACACTGCTCCCCTGGAATTTTTTTATGACCGCAACCAAGTATTTCACAAACCGCCTGGACGTGTCCCA
GAATGTGTCCTCGGACACTGATCAATCATGCGAAAGCACCAAGGCCTTGGCTGACCCCACAGTGGCCTTG
CCAGCCCGGAGTTCTCTCAGTGCCATCTTCAACAATGTCATGACCCTGTGTGCCATGCTGCCCTTGCTGG
TCTTCACCTGCCTCAACTCGTTTCTGCATCAGCGGATCTCTCAATCTGTTCGGATCTTGGGCAGCCTGCT
GGCAATCCTGCTGGTATTCCTTGTCACTGCCGCCCTGGTGAAGGTGGAGATGGATGCTCTGATCTTCTTT
GTCATCACCATGATCAAGATTGTGCTCATCAATTCATTTGGTGCCATTTTGCAAGCCAGCCTTTTTGGTC
TGGCAGGTGTCCTGCCAGCCAACTACACAGCCCCCATCATGAGTGGCCAGGGCCTGGCTGGCTTCTTCAC
CTCTGTCGCCATGATCTGTGCCATTGCCAGTGGTTCTGAGCTGTCAGAAAGCGCCTTTGGCTACTTCATC
ACAGCCTGTGCAGTTGTCATTTTGGCCATCCTGTGCTACCTGGCTCTGCCTCGGACGGAATTCTATCGCC
ATTACCTGCAGCTCAACCTTGCGGGGCCTGCAGAGCAGGAGACCAAGTTGGATCTCATAAGTAAAGGAGA
GGAGCCAAAAGGAAGAAGAGAGGAATCTGGGGTGCCAGGCCCCAACTCTCCACCCACCAACAGAAACCAG
TCTATCAAAGCCATACTTAAGAGTATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCA
TTGGGTTGTTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCACAAGTCCCTGGAAAAGCTA
CTTCATTCCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTC
TGCATGTGGCCTGGCCAGGATAGCCGCTGGCTGCCGGTTTTGGTCGCCTCGAGGATTGTGTTTATTCCCC
TGCTGATGCTCTGCAACGTGAAGGCTCGCCACTGCGGCGCGCAGCGGCACCACTTCGTCTTTAAGCATGA
CGCCTGGTTCATCGCCTTCATGGCTGCCTTTGCCTTCTCCAATGGCTACCTCGCCAGCCTCTGCATGTGC
TTCGGGCCCAAGAAAGTCAAACCAGCTGAGGCGGAGACAGCAGGAAACATCATGTCCTTCTTTCTGTGTC
TGGGCCTGGCTCTGGGAGCTGTGTTGTCCTTCTTGTTAAGGGCACTTGTGTGA

Translation (460 aa):
MTTSHQPQDRYKAVWLIFFVLGLGTLLPWNFFMTATKYFTNRLDVSQNVSSDTDQSCESTKALADPTVAL
PARSSLSAIFNNVMTLCAMLPLLVFTCLNSFLHQRISQSVRILGSLLAILLVFLVTAALVKVEMDALIFF
VITMIKIVLINSFGAILQASLFGLAGVLPANYTAPIMSGQGLAGFFTSVAMICAIASGSELSESAFGYFI
TACAVVILAILCYLALPRTEFYRHYLQLNLAGPAEQETKLDLISKGEEPKGRREESGVPGPNSPPTNRNQ
SIKAILKSICVPALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKSYFIPVACFLNFNVFDWLGRSLTAV
CMWPGQDSRWLPVLVASRIVFIPLLMLCNVKARHCGAQRHHFVFKHDAWFIAFMAAFAFSNGYLASLCMC
FGPKKVKPAEAETAGNIMSFFLCLGLALGAVLSFLLRALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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