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Report for CCDS57026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57026.1 Public Mus musculus 16 Dlg1 23 108 98 CCDS HistoryNCBI Gene:13383Re-query CCDS DB by CCDS ID:57026.1Re-query CCDS DB by GeneID:13383See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023454.11 ENSMUSP00000023454.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023454.11Link to Ensembl Protein Viewer:ENSMUSP00000023454.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023454Re-query CCDS DB by Protein ID:ENSMUSP00000023454
Original member Current member NCBI NM_001252434.1 NP_001239363.1 Accepted alive Link to Nucleotide Sequence:NM_001252434.1Link to Protein Sequence:NP_001239363.1Re-query CCDS DB by Nucleotide ID:NM_001252434Re-query CCDS DB by Protein ID:NP_001239363Link to BLAST:NP_001239363.1

Chromosomal Locations for CCDS 57026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31664852 31664870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31665575 31665706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31684128 31684294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31743106 31743270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31781782 31781835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31788082 31788132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31790177 31790301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31791715 31791884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31793504 31793640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31796866 31797010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31805614 31805734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31812668 31812824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31829466 31829568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31836190 31836304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31838050 31838226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31842770 31842839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31847636 31847669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31853843 31853884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31856441 31856491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31857547 31857648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31857892 31858064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31863173 31863282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31867831 31867922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31871675 31871781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2619 nt):
ATGCCGGTCCGGAAGCAAGATACCCAGAGAGCATTGCATCTGTTGGAAGAATATCGATCGAAACTAAGCC
AAACTGAAGACAGACAACTCAGAAGTTCCATAGAGCGGGTTATTAACATATTTCAGAGCAACCTCTTTCA
GGCTTTAATAGATATTCAAGAATTTTATGAAGTGACCTTACTTGATAATCCAAAATGTGTGGATCATTCA
AAGCAGTGTGAACCAGTTCAGCCTGTGACTACTTGGGAGATTGCCAGCCTTCCAAGCACTGCCGTGACGT
CAGAAACCCTGCCCGGCAGCCTTAGCCCTCCAGTAGAGAAATACCGGTATCAGGATGAAGAGGTACTTCC
TCCTGAGCATATTTCTCCACAAGTCACAAATGAGGTGCTAGGTCCAGAACTGGTCCATGTCTCAGAGAAG
AACCTGTCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATATCTCACCAATAAAGGCAAATC
CTCCTCCAGTGCTGGTCAACACAGACAGCTTAGAGACACCAACTTATGTTAATGGCACTGATGCAGATTA
TGAATATGAGGAAATCACACTTGAAAGGGGAAATTCGGGTCTTGGTTTCAGCATTGCAGGAGGTACAGAC
AACCCACACATTGGAGATGACTCAAGTATTTTCATCACCAAAATTATCACAGGCGGAGCGGCTGCCCAGG
ATGGAAGATTGCGGGTAAATGACTGTATACTGAGAGTAAATGAAGCAGACGTTCGTGATGTAACCCACAG
CAAAGCAGTGGAGGCATTAAAAGAAGCTGGATCTATTGTGCGATTGTATGTGAAAAGGCGGAAGCCAGCA
TCAGAAAAAATCATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGGTTCAGCATTGCTGGAGGTG
TTGGAAATCAGCACATTCCTGGTGATAACAGCATCTATGTAACCAAAATAATTGAAGGAGGTGCAGCACA
CAAGGATGGCAAGCTTCAGATTGGAGATAAGCTTCTAGCAGTGAACAGTGTGTGTTTAGAAGAAGTTACT
CATGAAGAAGCAGTGACTGCCTTAAAGAATACATCTGATTTTGTTTATTTGAAAGTGGCAAAACCAACAA
GTATGTATATAAATGATGGCTATGCACCACCTGACATCACTAATTCTTCTTCTCAATCTGTTGACAACCA
TGTCAGCCCGTCCTCCTGCTTGGGCCAGACGCCAACGTCACCAGCCAGGTACTCACCCATTTCTAAAGCT
GTGCTCGGAGATGACGAGATCACTAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACAGGACTTG
GTTTTAACATTGTGGGAGGTGAAGATGGAGAAGGGATTTTTATCTCCTTCATCCTTGCTGGCGGACCTGC
TGATCTAAGTGGAGAGCTCAGAAAAGGAGATCGCATCATATCGGTGAACAGTGTTGACCTCAGAGCTGCA
AGTCACGAACAAGCAGCAGCTGCACTAAAGAACGCAGGCCAAGCCGTCACCATCGTTGCGCAATATCGAC
CCGAAGAGTACAGTCGTTTTGAAGCTAAAATCCATGACTTACGGGAGCAGATGATGAATAGCAGTGTCAG
TTCAGGGTCAGGGTCTCTTCGAACCAGCCAGAAGCGCTCCCTCTATGTCAGAGCCCTCTTTGATTATGAC
AAGACTAAGGACAGCGGGCTTCCCAGTCAAGGACTGAACTTCCGCTTTGGAGACATCCTCCATGTCATCA
ATGCTTCTGACGACGAGTGGTGGCAAGCCAGGCAGGTCACCCCAGACGGGGAGAGTGACGAAGTCGGAGT
GATTCCTAGTAAACGAAGAGTTGAGAAGAAGGAACGAGCCCGATTAAAAACGGTCAAATTCAATTCTAAA
ACAAGAGGAGATAAAGGGGAGATCCCTGACGACATGGGATCAAAAGGCCTGAAGCACGTAACTTCTAATG
CCAGCGATAGTGAAAGTAGTTACCGTGGTCAAGAAGAATATGTTTTATCTTATGAGCCAGTGAATCAACA
AGAAGTTAATTATACCCGACCAGTCATCATATTAGGACCTATGAAAGACAGAGTAAATGATGACTTAATC
TCAGAATTTCCTGACAAATTTGGATCCTGTGTCCCTCATACAACTAGACCGAAGCGTGACTATGAGGTGG
ATGGACGAGATTATCATTTTGTGACTTCAAGGGAACAGATGGAAAAGGATATTCAGGAGCATAAGTTCAT
TGAAGCCGGCCAGTATAACAACCATCTGTATGGGACGAGCGTGCAGTCCGTGCGAGCAGTGGCAGAGAAG
GGCAAACATTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGGTTGCAGATTGCACAGCTTTATCCAA
TATCTATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAACAAGCGCCTAACAGAAGAGCA
GGCCAGAAAAACATTTGAGAGAGCCATGAAGCTGGAGCAGGAGTTCACTGAGCATTTCACAGCTATTGTC
CAGGGAGACACGCTGGAGGACATTTACAACCAAGTGAAACAGATCATCGAAGAACAGTCTGGGCCTTACA
TCTGGGTCCCAGCGAAAGAAAAGCTATGA

Translation (872 aa):
MPVRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEVTLLDNPKCVDHS
KQCEPVQPVTTWEIASLPSTAVTSETLPGSLSPPVEKYRYQDEEVLPPEHISPQVTNEVLGPELVHVSEK
NLSEIENVHGFVSHSHISPIKANPPPVLVNTDSLETPTYVNGTDADYEYEEITLERGNSGLGFSIAGGTD
NPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKPA
SEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVT
HEEAVTALKNTSDFVYLKVAKPTSMYINDGYAPPDITNSSSQSVDNHVSPSSCLGQTPTSPARYSPISKA
VLGDDEITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAA
SHEQAAAALKNAGQAVTIVAQYRPEEYSRFEAKIHDLREQMMNSSVSSGSGSLRTSQKRSLYVRALFDYD
KTKDSGLPSQGLNFRFGDILHVINASDDEWWQARQVTPDGESDEVGVIPSKRRVEKKERARLKTVKFNSK
TRGDKGEIPDDMGSKGLKHVTSNASDSESSYRGQEEYVLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLI
SEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEK
GKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFTEHFTAIV
QGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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