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Report for CCDS56823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56823.1 Public Mus musculus 11 Trim47 23 108 98 CCDS HistoryNCBI Gene:217333Re-query CCDS DB by CCDS ID:56823.1Re-query CCDS DB by GeneID:217333See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021120.5 ENSMUSP00000021120.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021120.5Link to Ensembl Protein Viewer:ENSMUSP00000021120.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021120Re-query CCDS DB by Protein ID:ENSMUSP00000021120
Original member Current member NCBI NM_001205081.1 NP_001192010.1 Accepted alive Link to Nucleotide Sequence:NM_001205081.1Link to Protein Sequence:NP_001192010.1Re-query CCDS DB by Nucleotide ID:NM_001205081Re-query CCDS DB by Protein ID:NP_001192010Link to BLAST:NP_001192010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192010.1 642 Q8C0E3-2 642 100% 0 0

Chromosomal Locations for CCDS 56823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116106001 116106641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116106932 116107006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116107424 116107622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116107778 116108008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116108266 116108361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116109534 116110220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGACGGCAGCGGGCCTTTCAGCTGCCCCATCTGCCTGGAACCGCTCCGGGAGCCGGTGACACTACCCT
GCGGCCACAACTTCTGCCTCGCTTGCCTGGGCGCTCTCTGGCCGCACCGGAGCGCGGGCGGCACCGGTGG
TTCCGGAGGTCCAGCTCGCTGTCCACTTTGTCAGGAGCCTTTCCCCGACGGCCTGCAGCTCCGCAAGAAC
CACACGCTGTCCGAGTTGCTGCAGCTCCGCCAGGGCTCGGTCCCGGGACCCATGTCCGCCCCGGCTTCAG
GATCGACCCGGGGCGCCACGCCCGAGCCCTCCGCGCCCAGCGCACCACCTCCGGCTCCGGAACCATCGGC
TCCCTGCGCGCCGGAGCAGTGGCCCGCGGGTGAGGAGCCGGTGCGCTGCGACGCGTGCCCCGAGGGCGCC
GCCCTGCCCGCCGCGCTCTCTTGCCTCTCCTGCCTCGCCTCCTTCTGCTCCGCGCATCTGGCCCCCCACG
AACGCAGCCCCGCCCTGCGCGGCCACCGCCTGGTGCCCCCGCTGCGCCGACTTGAGGAGAGCCTGTGTCC
GCGCCACCTGCGGCCTCTGGAGCGCTACTGTCGCGTGGAGCGTGTGTGCCTTTGCGAGGCCTGTGCCACT
CAGGACCATCGCGGCCACGAGCTCGTGCCGCTGGAGCAGGAGCGCGCGCTTCAGGAGGTGGAGCAGTCCA
AAGTCCTGAGCGCTGCGGAGGACCGCATGGATGAACTGGGTGCCGGCATCGCACAGTCCCGCCGTACTGT
GGCCCTCATCAAGAGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCC
ACCCTTCAGAGTTTCCAGAACGAGGTGATGGGGTTCATCGAAGAGGGAGAGGCCACAATGTTGGGCCGGT
CCCAGGGTGACCTGCGTAGACAAGAGGAACAGCGCAGCCGCCTAAGCAAGGCACGGCACAACCTCGGTCA
GGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAGGAGCTCCTGGCACTACGGCTGGCCCTGGAGGAGGGG
TGCGGCCCCGGGCCTGGGCCCCCCAGGGAACTCAGCTTCACCAAGTCCTCCCAGGTGGTCAAAGCGGTGA
GAGACACCCTCATCTCAGCCTGTGCCAGCCAGTGGGAGCAGCTGCGGGGGCTGGGCAGCAATGAGGATGG
GCTACAGAAACTCGGCTCAGAAGCAGATGTGGAGTCCCAGGACCCTGACAGTACCAGCCTGCTGGAGAGT
GAGGCCCCCAGGGATTACTTCCTCAAGTTTGCCTACATCGTGGACCTGGACAGCGACACCGCGGACAAGT
TCCTGCAGCTTTTTGGAACTAAAGGTGTCAAGAGAGTACTGTGTCCCATCAACTACCCGGAGTCACCCAC
CCGCTTCACACACTGCGAGCAGGTGCTAGGAGAGGGCGCCCTGGACCGGGGCACCTACTACTGGGAGGTG
GAGATCATCGAAGGATGGGTCAGTGTGGGAGTCATGGCCGAGGGCTTCTCCCCGCAAGAGCCCTATGACC
GGGGCCGGCTGGGCCGCAATGCACACTCATGCTGTCTGCAGTGGAATGGGCGTGGCTTCTCAGTCTGGTT
CTGCGGGCTGGAGGCCCCGCTACCCCATGCCTTTTCGCCTACAGTCGGGGTCTGCCTAGAGTATGCAGAC
CATGCCCTGGCCTTCTATGCTGTCCGAGACGGAAAGCTGAGCCTTCTTCGGAGGCTCAAAGCCTCCCGGC
CTCGCCGCAGCGGTGCTCTGGCCTCCCCCACTGACCCTTTTCAGAGTCGCCTGGACAGCCATTTTTCCGG
GCTCTTCAACCACAGGCTCAAGCCTGCCTTCTTCCTGGAGAGTGTGGACGCCCATCTGCAGATTGGACCT
CTCAAGAAATCGTGCATAACCGTGCTGAAGAGGAGGTGA

Translation (642 aa):
MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEPFPDGLQLRKN
HTLSELLQLRQGSVPGPMSAPASGSTRGATPEPSAPSAPPPAPEPSAPCAPEQWPAGEEPVRCDACPEGA
ALPAALSCLSCLASFCSAHLAPHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRVERVCLCEACAT
QDHRGHELVPLEQERALQEVEQSKVLSAAEDRMDELGAGIAQSRRTVALIKSAAVAERERVSQMFAEATA
TLQSFQNEVMGFIEEGEATMLGRSQGDLRRQEEQRSRLSKARHNLGQVPEADSVSFLQELLALRLALEEG
CGPGPGPPRELSFTKSSQVVKAVRDTLISACASQWEQLRGLGSNEDGLQKLGSEADVESQDPDSTSLLES
EAPRDYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPESPTRFTHCEQVLGEGALDRGTYYWEV
EIIEGWVSVGVMAEGFSPQEPYDRGRLGRNAHSCCLQWNGRGFSVWFCGLEAPLPHAFSPTVGVCLEYAD
HALAFYAVRDGKLSLLRRLKASRPRRSGALASPTDPFQSRLDSHFSGLFNHRLKPAFFLESVDAHLQIGP
LKKSCITVLKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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