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Report for CCDS56817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56817.1 Public Mus musculus 11 Gga3 23 108 98 CCDS HistoryNCBI Gene:260302Re-query CCDS DB by CCDS ID:56817.1Re-query CCDS DB by GeneID:260302See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106508.9 ENSMUSP00000102117.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106508.9Link to Ensembl Protein Viewer:ENSMUSP00000102117.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106508Re-query CCDS DB by Protein ID:ENSMUSP00000102117
Original member NCBI NM_001252067.1 NP_001238996.1 Updated not alive Link to Nucleotide Sequence:NM_001252067.1Link to Protein Sequence:NP_001238996.1Re-query CCDS DB by Nucleotide ID:NM_001252067Re-query CCDS DB by Protein ID:NP_001238996
Current member NCBI NM_001252067.2 NP_001238996.1 Accepted alive Link to Nucleotide Sequence:NM_001252067.2Link to Protein Sequence:NP_001238996.1Re-query CCDS DB by Nucleotide ID:NM_001252067Re-query CCDS DB by Protein ID:NP_001238996Link to BLAST:NP_001238996.1

Chromosomal Locations for CCDS 56817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115585730 115585840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115586086 115586196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115586316 115586485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115586996 115587201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115587406 115587716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115587936 115588003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115588856 115588972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115589055 115589136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115590396 115590533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115590887 115590967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115591263 115591366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115591630 115591753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115592432 115592530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115594706 115594781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115594909 115594993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115603828 115603867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCGGAGGCGGAAGGGGAGAGCCTGGAGTCCTGGCTGAATAAAGCTACCAATCCTTCCAACCGCCAGG
AAGACTGGGAATATATCATTGGTTTCTGTGATCAGATCAACAAAGAGCTTGAAGGGCCCCAGATTGCTGT
GCGACTCCTGGCCCACAAGATCCAGTCTCCACAGGAATGGGAGGCAGTGCAGGCCCTCACGGTGCTGGAG
GCGTGTATGAAGAACTGTGGCAGGAGACTTCATAATGAAGTGGGGAAGTTCCGGTTTTTGAATGAATTAA
TCAAAGTCGTCTCTCCAAAGTACTTGGGAGACAGGGTGTCTGAAAAGGTGAAGACTAAGGTCATCGAGTT
GCTTTTTAGCTGGACACTGGCCTTGCCGGAAGAAGCAAAGATCAAAGATGCCTACCATATGTTGAAGAGA
CAAGGCATAGTGCAGTCGGACCCCCCCATCCCCATGGATAGAACGCTGATCCCCTCTCCCCCACCTCGGC
CCAAAAACCCCGTTTTTGATGATGAGGAGAAATCCAAGCTTTTAGCCAGGCTGCTGAAGAGCAAGAACCC
AGATGACCTGCAAGAGGCCAACAGACTCATCAAGTCCATGGTGAAGGAAGATGAGGCTCGCATCCAGAAA
GTGACCAAGCGTCTACACACACTGGAGGAGGTTAACAACAATGTCAAGCTGCTCCACGAGATGCTGCTTC
ACTACAGCCAAGAGTACTCGTCAGACGCCGACAAGGAGCTCATGAAGGAGCTCTTTGATCGTTGTGAGAA
TAAGAGGCGGACGCTGTTTAAACTAGCCAGCGAGACAGAGGACAATGACAACAGTTTGGGGGACATCCTG
CAGGCCAGTGACAACCTGTCCAGGGTCATCAACTCTTACAAAACTATTATTGAAGGGCAGATCGTCAATG
GTGAGGTGACCACCTCAACCATGCCTGACTCTGAAGGCCTTACTGACCCCGCCCCCACTGCTCCCAAAGA
GTCACCTGGAAGTAGTCAGTGGCACCTGTTCCAGAATGAACCACCATCAGATCTGGACTTCTTCAGTCCC
AGGCCAGTGCCTGCGGCCTCCTGCCCCTCAGATGGACCCCAGCTCCCTCCCCCAGTTTCTACCTCAAGTA
TGTCCCAAGCTCCACTGCCTGCTGCCTTCCCAGCTCCTGTGGTCCCAGCCAGTGCACCAACCCACAGCAC
TGGCTCCTTCATGTTCTCTTCTGGACCTGCCCCAGCCTTGGCTCCAAAGGCTGAGCCCAAAGGTCCAGAA
TACCCCAGCTCCAGCACCTCGCACCGCCTAGATGCCCTTGATCAGCTTCTGGAAGAGGCCAAAGTAACCT
CAGGCTTGGTGAAACCTGTTTCTTGCTTCTCTCCTGGGCCCACTGCCTCCCCGCTGCTGCCTGCCTCTGC
CCCAGCCAGACCTCTCCTGCCCTTCTCCACTGGGCCCGGAAGCCCTCTCTTCCAGTCCCAAGGCAGCCCT
CAGAAAGGCCCAGAGCTCTCCTTGGCCAGTGTCCATGTGCCCCTGGAATCGATCAAGCCTAGCAGTGCCC
TTCCCGTGACAGCCTATGATAAAAATGGCTTCCGCATCCTTTTCCACTTTGCTAAGGAGTGTCCGCCAGG
ACGGCCTGATGTGCTGGTGGTGGTGGTTTCCATGCTGAATACGGCTCCGTTGCCAGTCAAGAGCATAGTG
CTGCAGGCTGCAGTGCCCAAGTCAATGAAAGTGAAGTTGCAGCCACCCTCTGGGACAGAACTTTCCCCAT
TTAGTCCTATCCAGCCACCTGCAGCCATCACCCAGGTCATGCTGCTGGCCAATCCAATGAAGGAAAAGGT
GCGGCTTCGATATAAACTGACCTTTGCTTTGGGGGAGCAGCTGAGCACAGAACTGGGTGAAGTGGACCAG
TTTCCTCCTGTGGAGCAGTGGGGGAACCTATGA

Translation (640 aa):
MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTVLE
ACMKNCGRRLHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLFSWTLALPEEAKIKDAYHMLKR
QGIVQSDPPIPMDRTLIPSPPPRPKNPVFDDEEKSKLLARLLKSKNPDDLQEANRLIKSMVKEDEARIQK
VTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKELMKELFDRCENKRRTLFKLASETEDNDNSLGDIL
QASDNLSRVINSYKTIIEGQIVNGEVTTSTMPDSEGLTDPAPTAPKESPGSSQWHLFQNEPPSDLDFFSP
RPVPAASCPSDGPQLPPPVSTSSMSQAPLPAAFPAPVVPASAPTHSTGSFMFSSGPAPALAPKAEPKGPE
YPSSSTSHRLDALDQLLEEAKVTSGLVKPVSCFSPGPTASPLLPASAPARPLLPFSTGPGSPLFQSQGSP
QKGPELSLASVHVPLESIKPSSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNTAPLPVKSIV
LQAAVPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPMKEKVRLRYKLTFALGEQLSTELGEVDQ
FPPVEQWGNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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