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Report for CCDS56709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56709.1 Public Mus musculus 10 Fam13c 23 108 98 CCDS HistoryNCBI Gene:71721Re-query CCDS DB by CCDS ID:56709.1Re-query CCDS DB by GeneID:71721See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173042.8 ENSMUSP00000134648.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173042.8Link to Ensembl Protein Viewer:ENSMUSP00000134648.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173042Re-query CCDS DB by Protein ID:ENSMUSP00000134648
Original member NCBI NM_001143776.1 NP_001137248.1 Updated not alive Link to Nucleotide Sequence:NM_001143776.1Link to Protein Sequence:NP_001137248.1Re-query CCDS DB by Nucleotide ID:NM_001143776Re-query CCDS DB by Protein ID:NP_001137248
Current member NCBI NM_001143776.2 NP_001137248.1 Accepted alive Link to Nucleotide Sequence:NM_001143776.2Link to Protein Sequence:NP_001137248.1Re-query CCDS DB by Nucleotide ID:NM_001143776Re-query CCDS DB by Protein ID:NP_001137248Link to BLAST:NP_001137248.1

Chromosomal Locations for CCDS 56709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70441014 70441075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70448758 70448814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70451027 70451228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70477154 70477272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70498886 70498949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70520778 70520925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70534684 70534894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70536366 70536504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70542644 70542725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70544328 70544530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70551695 70551790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70553032 70553225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70554488 70554589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70557240 70557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGTTTTCTTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCGGCAGCGCCGCTGTAACTGAGTGTGACG
AAGATACAGTCTCTGTACATGAAGACGAAGACGACTGCTCTGGGCTCAGAGATGAAGACAATAAAGAGAA
TTACCCCCAGGTGGCAGCTCGCTTAGATGAGCTCGCCCTGCCCTCCCACGAGGCTCAGCAGCATGTAGAA
CAGACCCTGCCTGTGGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCA
TCCTCAGAGCCGAGAGTGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTC
AGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAA
ACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAAGGATGCTTTTGGAACTCAGC
AGGACTTACATGAGAATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGGTCTGTGCTCCGCGTTTCTGAC
GACCCAGGAAGAAGATGGCCAGGTGCACGGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGTGCGCCT
GCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCACCGGGTGACGCCGACGGTACCT
CAGAAGACCTCCAGTCTGCAGGGACCAGCAGGCTACTCTATCACATCACCGATGGTGACAATCCGTTGCT
GTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCA
CCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGC
AGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATT
TGAACAAGAAAAGAAATACCGCCCGTCGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGAAATGGATG
AACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTA
CGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGA
AGCCGTGGGCCCCGAACCAGGCTCCTCTGGCGAGGAGACTTCAGATGCTGTGGTGCCGGAGAAGAGAGAA
CAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCCTCTTTATGACC
GATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTGAGGAAGAGGACTCTGA
TGAAGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACCAGATCCAGTGTCCCGCCTACCTGTCGGTGAT
CACCTCATCTACTCGGAGACAGAGCCTGTGAGGACCCTGCTACCAGATGAAAAGAAAGAAGGGAAGCAGC
CAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAG
GGCTGACAAGAAGAGGCTACGGAAAGCCCTGCGAGAATTTGAAGAACAATTTTTTAAACAGACGGGAAGA
AGCCCCCAGAAGGAAGACAGGATGCCGATGGCAGATGAGTACTGTGAATACAAGCACATAAAAGCCAAGC
TGAGACTACTGGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAACTATTTGA

Translation (600 aa):
MFSCFCFSLQDNSFGSAAVTECDEDTVSVHEDEDDCSGLRDEDNKENYPQVAARLDELALPSHEAQQHVE
QTLPVDGVLRTSMGNFKSRKPKSILRAESGRNHGESQETEHVVPSQSECQGRAGTPAHESPQSSIFRCQE
TVRLQPRIDQRATIWPKDAFGTQQDLHENSLLKLQALESGLCSAFLTTQEEDGQVHGVKDPAPASTQSAP
ADSADPADPMPAHKDAPGDADGTSEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSP
PSSQQFMMPRSSSRCGSGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWM
NDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKSEAVGPEPGSSGEETSDAVVPEKRE
QTPPQDDGKGTKQDKNLIKPLYDRCRGIKQILPTPSLIPTIEEEDSDEDCPQGSQQPSLPDPVSRLPVGD
HLIYSETEPVRTLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGR
SPQKEDRMPMADEYCEYKHIKAKLRLLEVLISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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