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Report for CCDS56675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56675.1 Public Mus musculus 10 Rmnd1 23 108 98 CCDS HistoryNCBI Gene:66084Re-query CCDS DB by CCDS ID:56675.1Re-query CCDS DB by GeneID:66084See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042251.10 ENSMUSP00000043355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042251.10Link to Ensembl Protein Viewer:ENSMUSP00000043355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042251Re-query CCDS DB by Protein ID:ENSMUSP00000043355
Original member NCBI NM_001358796.1 NP_001345725.1 Updated not alive Link to Nucleotide Sequence:NM_001358796.1Link to Protein Sequence:NP_001345725.1Re-query CCDS DB by Nucleotide ID:NM_001358796Re-query CCDS DB by Protein ID:NP_001345725
Current member NCBI NM_001358796.2 NP_001345725.1 Accepted alive Link to Nucleotide Sequence:NM_001358796.2Link to Protein Sequence:NP_001345725.1Re-query CCDS DB by Nucleotide ID:NM_001358796Re-query CCDS DB by Protein ID:NP_001345725Link to BLAST:NP_001345725.1
Original member NCBI NM_025343.6 NP_079619.4 Updated not alive Link to Nucleotide Sequence:NM_025343.6Link to Protein Sequence:NP_079619.4Re-query CCDS DB by Nucleotide ID:NM_025343Re-query CCDS DB by Protein ID:NP_079619
Current member NCBI NM_025343.7 NP_079619.4 Accepted alive Link to Nucleotide Sequence:NM_025343.7Link to Protein Sequence:NP_079619.4Re-query CCDS DB by Nucleotide ID:NM_025343Re-query CCDS DB by Protein ID:NP_079619Link to BLAST:NP_079619.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345725.1 450 Q8CI78 450 100% 0 0
NP_079619.4 450 Q8CI78 450 100% 0 0

Chromosomal Locations for CCDS 56675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 4403469 4403501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4403874 4403990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4407805 4407925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4410713 4410789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4411667 4411731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4413309 4413415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4414543 4414643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4417153 4417192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4418556 4418631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4422082 4422190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4427171 4427677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGCCATCCAGGCTTCTCCACACCCTGGCAAGTTTACACAGCATATCAGCAAAGGCTCATCAGTGCCAGA
GA
CTTACTTGGCTTACATTAAGACCACTTAGGAAATCTGAAAGTACAACATGCCACAATGGCCTGACAAT
A
CAGCAACATTTACACTCATTCTTTCCAAGTATAACAGCTGACAGTTTGAATAAGCCAGAGATCCTGGAA
ATG
AGCCGGATAACATCAGACACAAGCAGACTCTTTCCGTTAAATGCTGTCCATTGGTTGGACGGCAAAG
AA
CACTGGCCAAGCATGCACCCCTTTGGGACTCACAGGAGCATGACCCACAAACCAAATCTCTTGTGTTC
T
AAGTGGTTTATAAAAGCAGTAAAGAGGCATCACTCATCTGTATCAAATGAAGCACTTGTTCCCAAACAA
GAC
CTTCCGCAGATCAAGAGGCCGCTGAAAGCATCCCGGACCCGGCAGCCATCCAGGACCAACCTTCCAG
AT
CTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAG
T
CTGTCTCAAGAGCTGGTCTCCTGTGGCTATGTGGAAGTGACAAGCCTGCCTAGAGATGCAGCAAATATT
TTG
GTGATGGGTGTGGAAAGTTCTGCAAAAGAAGGTGATCCCGGAACAATATTCTTGTTCAGGGAAGGAG
CT
GCTGTGTTCTGGAATGTAAAAGAAAAAACTATGAAGCACGTGATGCAAGTTCTAGAGAGACACGAAAC
C
CAGCCCTATGAAGTGGCTCTCGTTCACTGGGAGAACGAAGAACTCAACTACATAAAGACAGAGGGACAA
TCA
AAACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCTGGACTTGGATGACGCCATTCTAGAGAAAT
TT
GCGTTCTCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATTTGGGAAGCAACCCTGGACAAATTTAT
T
GAGTCTATTCAGTCCATTCCAGAGGCATTAAAAGCTGGGAAGAAAGTCAAACTGTCTCATAAAGAAGTT
ATG
CAGAAAATGGGTGAGCTCTTTGCCCTCAGGCACCGAATAAACCTGAGCTCAGATTTCTTGATCACCC
CT
GACTTCTACTGGGACAGAGCAAACCTGGAAGAGCTTTATGACAAGACCTGCCAGTTCCTTAGCATCAC
G
CGAAGAGTTAAGGTCATGAATGAAAAACTGCAGCACTGCATGGAACTAACAGACCTAATGCGGAATCAC
CTC
AATGAGAAGCGAGCACTCCGCTTGGAGTGGATGATCGTCATCCTCATCACCATTGAGGTAATGTTTG
AG
CTGGGGAGAGTCTTCTTCTGA


Translation (450 aa):
MPSRLLHTLASLHSISAKAHQCQRLTWLTLRPLRKSESTTCHNGLTIQQHLHSFFPSITADSLNKPEILE
M
SRITSDTSRLFPLNAVHWLDGKEHWPSMHPFGTHRSMTHKPNLLCSKWFIKAVKRHHSSVSNEALVPKQ
D
LPQIKRPLKASRTRQPSRTNLPDLSVNE
DLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANI
L
VMGVESSAKEGDPGTIFLF
REGAAVFWNVKEKTMKHVMQVLERHETQPYEVALVHWENEELNYIKTEGQ
S
KLHRGEIKLNSELDLDDAILEKFAFSNALCLS
VKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEV
M
QKMGELFAL
RHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNH
L
NEKRALRLEWMIVILITIE
VMFELGRVFF



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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