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Report for CCDS56089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56089.1 Public Homo sapiens 19 ARMC6 24 110 108 CCDS HistoryNCBI Gene:93436Re-query CCDS DB by CCDS ID:56089.1Re-query CCDS DB by GeneID:93436See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392336.7 ENSP00000376148.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392336.7Link to Ensembl Protein Viewer:ENSP00000376148.3Re-query CCDS DB by Nucleotide ID:ENST00000392336Re-query CCDS DB by Protein ID:ENSP00000376148
Original member Current member EBI ENST00000535612.6 ENSP00000444156.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535612.6Link to Ensembl Protein Viewer:ENSP00000444156.1Re-query CCDS DB by Nucleotide ID:ENST00000535612Re-query CCDS DB by Protein ID:ENSP00000444156
Original member Current member NCBI NM_001199196.2 NP_001186125.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199196.2Link to Protein Sequence:NP_001186125.1Re-query CCDS DB by Nucleotide ID:NM_001199196Re-query CCDS DB by Protein ID:NP_001186125Link to BLAST:NP_001186125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186125.1 501 Q6NXE6-1 501 100% 0 0

Chromosomal Locations for CCDS 56089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19034210 19034238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19042711 19042877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19043992 19044074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19051622 19052195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19054152 19054321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19055265 19055396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19055791 19055928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19057416 19057628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAGTGAACGATGTTGCTCTAGATACAGCTCAGGAGCATCTATCGGCTGCACGCCAACATCAACACAGG
CGAAGATGGTCTCCAAGCGCATTGCCCAGGAGACCTTTGATGCAGCTGTGCGCGAGAACATCGAGGAGTT
TGCGATGGGGCCAGAGGAGGCAGTGAAAGAGGCCGTGGAGCAGTTTGAATCGCAAGGGGTTGATCTGAGC
AACATTGTAAAGACGGCACCTAAAGTCTCTGCAGACGGATCCCAGGAGCCCACACATGACATCCTGCAGA
TGCTCAGTGACCTCCAGGAGTCTGTGGCCAGCTCTCGCCCCCAGGAGGTGTCAGCATACCTCACCCGCTT
CTGCGACCAGTGCAAACAGGACAAGGCCTGCCGCTTCCTCGCGGCCCAGAAGGGGGCCTACCCCATCATC
TTCACTGCCTGGAAGCTGGCCACTGCAGGTGACCAGGGCCTTCTGCTCCAGTCCCTCAATGCCCTGTCGG
TGCTGACTGATGGACAGCCAGACCTCCTGGATGCCCAGGGCCTGCAGCTCCTAGTGGCCACGCTGACCCA
GAATGCTGATGAGGCTGACCTGACCTGCTCTGGGATCCGCTGTGTGCGTCACGCTTGCCTGAAACATGAA
CAGAATCGGCAAGACCTGGTGAAAGCTGGCGTGCTGCCTCTGCTGACTGGTGCCATCACCCATCATGGCC
ACCACACTGACGTGGTCAGGGAAGCCTGCTGGGCCCTGCGTGTCATGACCTTCGATGACGACATCCGTGT
GCCCTTTGGCCATGCCCACAACCATGCCAAGATGATTGTGCAGGAGAACAAAGGCTTGAAGGTGCTCATC
GAAGCCACCAAAGCGTTCCTGGATAACCCTGGCATCCTGAGCGAGCTCTGTGGAACCCTGTCCCGCCTGG
CCATTCGCAACGAGTTCTGCCAGGAGGTCGTCGACCTCGGGGGCCTGAGCATTCTGGTGTCCCTGCTAGC
CGACTGCAATGACCACCAGATGAGGGACCAGAGCGGCGTTCAGGAGCTCGTGAAGCAAGTGCTGAGCACC
CTGCGAGCCATCGCAGGCAACGACGACGTGAAAGATGCTATTGTCCGTGCTGGTGGGACGGAGTCCATCG
TGGCTGCTATGACCCAGCATCTGACCAGCCCCCAGGTGTGTGAGCAGAGCTGCGCGGCCCTGTGCTTCCT
GGCCCTGCGTAAGCCCGACAACAGCCGCATCATCGTGGAGGGTGGCGGGGCTGTGGCAGCACTGCAGGCC
ATGAAGGCACACCCGCAGAAGGCCGGCGTGCAGAAACAGGCTTGCATGCTGATCCGAAACCTGGTGGCCC
ACGGCCAGGCCTTCTCGAAGCCCATCCTGGACCTGGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGC
CCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAG
CTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGA

Translation (501 aa):
MSERCCSRYSSGASIGCTPTSTQAKMVSKRIAQETFDAAVRENIEEFAMGPEEAVKEAVEQFESQGVDLS
NIVKTAPKVSADGSQEPTHDILQMLSDLQESVASSRPQEVSAYLTRFCDQCKQDKACRFLAAQKGAYPII
FTAWKLATAGDQGLLLQSLNALSVLTDGQPDLLDAQGLQLLVATLTQNADEADLTCSGIRCVRHACLKHE
QNRQDLVKAGVLPLLTGAITHHGHHTDVVREACWALRVMTFDDDIRVPFGHAHNHAKMIVQENKGLKVLI
EATKAFLDNPGILSELCGTLSRLAIRNEFCQEVVDLGGLSILVSLLADCNDHQMRDQSGVQELVKQVLST
LRAIAGNDDVKDAIVRAGGTESIVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRIIVEGGGAVAALQA
MKAHPQKAGVQKQACMLIRNLVAHGQAFSKPILDLGAEALIMQARSAHRDCEDVAKAALRDLGCHVELRE
LWTGQRGNLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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