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Report for CCDS54452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54452.1 Public Homo sapiens 20 CFAP61 24 110 108 CCDS HistoryNCBI Gene:26074Re-query CCDS DB by CCDS ID:54452.1Re-query CCDS DB by GeneID:26074See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377306.5 ENSP00000366521.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377306.5Link to Ensembl Protein Viewer:ENSP00000366521.1Re-query CCDS DB by Nucleotide ID:ENST00000377306Re-query CCDS DB by Protein ID:ENSP00000366521
Original member Current member EBI ENST00000451767.6 ENSP00000414537.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451767.6Link to Ensembl Protein Viewer:ENSP00000414537.2Re-query CCDS DB by Nucleotide ID:ENST00000451767Re-query CCDS DB by Protein ID:ENSP00000414537
Original member Current member NCBI NM_001167816.1 NP_001161288.1 Accepted alive Link to Nucleotide Sequence:NM_001167816.1Link to Protein Sequence:NP_001161288.1Re-query CCDS DB by Nucleotide ID:NM_001167816Re-query CCDS DB by Protein ID:NP_001161288Link to BLAST:NP_001161288.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161288.1 470 Q8NHU2-3 470 100% 0 0

Chromosomal Locations for CCDS 54452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 20056654 20056796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20070854 20071004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20074302 20074378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20075189 20075256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20075489 20075615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20090844 20090976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20098655 20098814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20142857 20142948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20159370 20159444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20164050 20164228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20166397 20166436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20169321 20169460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 20171781 20171808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGTCAGTACTCACTTCTCCAAGAGGAAAGGTAGAAGTTGTTCATTGCCGAAGAACAGAATCACAGGATG
TTTATTGTATCAAAAGCCTTATTAGAAAATTTACCTGCAAGCTGTTTGGGAAGCTAAATATCATCTATCT
TCTAGAAAAGGCCAACCTTGCTGTTACCCTCTGCAATGACAAGGAGGAGATCATGGCCCAGGCCACCTTC
CTGGACTACCCCAACTGGAATGTTGCCAAGCAGGATGACTGGGTGTCAGTGTTCCGGGAGCTCGACAGTG
ACATCCCATGCACACCCCTGAATACGTTGTTCATGCACCTCTTTGTGGCCGTGGATGAGTATTCTGTTGG
CTGTTGCAAAGAGATTCTTCGAACCGTGTATAAGGCAGTGCCAGAGCTGCACTTCATATTTCTCATCGTG
CCATCCTACATGAGCCTAGGCTCAACTCTCATAACTGTTTTTGACCAAGTGGGGAACATCCCGTGTCTGA
CGTATGAGGAAGACTTTGCAGTGCATATATGTCACAGGCACAGCCACTATCCTCAGCTGCACGTTCGCAA
AGCCAGGGTGGAAGACCATGACGATCTCATGCCAATATTTATGCGCTATGACACAATTCTGAAGGAAACT
TACGGTGAATACTTCCTGGCCGAACTAATAGAGGCCCAAGATGAAGAGAATCATGCTGTTGTGTGTGAGG
TGGAAGGCACAGCTGTTGGGTTCATGAGTGTGTGCTCAAGAGTGAACATGCAACTGCTGCATGAGTGCTT
TGACTTGGGCCCTTTCCACGGACTCTGTTTCCCACATCCTGATGACGTTCTGGAATCACCACAAGACCTA
AGTGTCCGAAGAAGTCAAGATGCTGAGCTCAGGAGTAGCAGCCAAGGTTCCCAAAAAATAGTCGAGGAGT
TGCAGGAACCTGTCTCTCCAGATACCATGGAAAACATCCAGGGAAATATTGCCAGAGAAGCTGCATCCGA
GGAAGCTTTAACAGCAGTCCAAAGTGGAAATGTTAGTGAACCGGAGGACATAGAAAAACTCAGTGACATC
TCCACTGGATATGCACAGTATCACCATGTCAGCAGTAGGAGCTTGGCATCGCTCGTACTGCCTGAAGAGC
CCGTCCACTTCCGCCCCATCTACAGGGGAGCCTCAGCTGCTTTTTGTATTCAGCTGTTTTGTATTGATGA
GAAATATGAAGCAAGGTCGCTGGATTTTATGAATTTTGTTTTCAGTCTTTTTTCTGATAAGAACTTCTGT
GTAATTTCTCTGCCCCATCTCACCCCCGAGTTCTTCCTCATCCAGAACTTCGTGAAAATGGTCCCTTTCA
ACACCTGCACCCTCGAGCAGGACCTCTACGTCTTCCACCGGGCTGGATTGCTCAAAAACATTTGTCTGGG
AAGGAGTTCATAG

Translation (470 aa):
MSVLTSPRGKVEVVHCRRTESQDVYCIKSLIRKFTCKLFGKLNIIYLLEKANLAVTLCNDKEEIMAQATF
LDYPNWNVAKQDDWVSVFRELDSDIPCTPLNTLFMHLFVAVDEYSVGCCKEILRTVYKAVPELHFIFLIV
PSYMSLGSTLITVFDQVGNIPCLTYEEDFAVHICHRHSHYPQLHVRKARVEDHDDLMPIFMRYDTILKET
YGEYFLAELIEAQDEENHAVVCEVEGTAVGFMSVCSRVNMQLLHECFDLGPFHGLCFPHPDDVLESPQDL
SVRRSQDAELRSSSQGSQKIVEELQEPVSPDTMENIQGNIAREAASEEALTAVQSGNVSEPEDIEKLSDI
STGYAQYHHVSSRSLASLVLPEEPVHFRPIYRGASAAFCIQLFCIDEKYEARSLDFMNFVFSLFSDKNFC
VISLPHLTPEFFLIQNFVKMVPFNTCTLEQDLYVFHRAGLLKNICLGRSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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